Mercurial > repos > estrain > amrfinderplus_db
comparison data_manager_amrfinderplus/data_manager/data_manager_amrfinderplus.xml @ 0:5ba68abd41f6 draft
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| author | estrain |
|---|---|
| date | Tue, 24 May 2022 11:46:19 +0000 |
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| -1:000000000000 | 0:5ba68abd41f6 |
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| 1 <tool id="data_manager_amrfinderplus" name="AMRFinderPlus Data Manger" tool_type="manage_data" version="0.0.3" profile="20.01"> | |
| 2 <requirements> | |
| 3 <requirement type="package">blast</requirement> | |
| 4 <requirement type="package">hmmer</requirement> | |
| 5 </requirements> | |
| 6 <command detect_errors="exit_code"><![CDATA[ | |
| 7 python $__tool_directory__/data_manager_amrfinderplus.py --name $amrdbname --out ${output_file}; | |
| 8 ]]></command> | |
| 9 <inputs> | |
| 10 <param name="amrdbname" type="text" value="latest" label="Release Version - Note: only latest release is supported"/> | |
| 11 </inputs> | |
| 12 <outputs> | |
| 13 <data name="output_file" format="data_manager_json"/> | |
| 14 </outputs> | |
| 15 <tests> | |
| 16 <test> | |
| 17 </test> | |
| 18 </tests> | |
| 19 <help> | |
| 20 </help> | |
| 21 <citations> | |
| 22 Refer to https://ftp.ncbi.nlm.nih.gov/pathogen/Antimicrobial_resistance/AMRFinderPlus/database/latest/ for latest database version number. | |
| 23 </citations> | |
| 24 </tool> |