# HG changeset patch
# User estrain
# Date 1731530329 0
# Node ID 9307aff93567b6a3f13bad77795df2e15aebdb52
# Parent  d4af9796b68217b157b16cc3b8f40da6a231348f
Uploaded

diff -r d4af9796b682 -r 9307aff93567 btyper-3.2.0/btyper.xml
--- a/btyper-3.2.0/btyper.xml	Tue May 17 02:13:00 2022 +0000
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,36 +0,0 @@
-<tool id="btyper" name="BTyper" version="3.2.0">
-    <requirements>
-      <requirement type="package">btyper3</requirement>
-    </requirements>
-    <command detect_errors="exit_code"><![CDATA[
-
-      btyper3 -i $draft
-      -o "./"; cat btyper3_final_results/*.txt > results.txt; 
-
-    ]]></command>
-    <inputs>
-       <param name="draft" type="data" format="fasta" label="FASTA" />
-    </inputs>
-    <outputs>
-      <data format="tabular" label="BTyper Results" name="results" from_work_dir="*.txt"/>
-    </outputs>
-    <help><![CDATA[
-      BTyper is a that employs a combination of (i) virulence gene-based typing, (ii) multi-locus sequence typing (MLST), (iii) panC clade typing, and (iv) rpoB allelic typing to rapidly classify B. cereus group isolates using nucleotide sequencing data. 
-
-      The Draft Genome option concatenates contigs in a single fasta file and produces a single report. The Complete Genome option assumes a single chromosome, and plasmids if present, and the report contains a section for each fasta header in the input file.
-
-    ]]></help>
-    <citations>
-       <citation type="bibtex">
-        @misc{carrol_kovac_miller_wiedman_2017,
-        title={Rapid, high-throughput identification of anthrax-causing and emetic Bacillus cereus group genome assemblies using BTyper, a computational tool for virulence-based classification of Bacillus cereus group isolates using nucleotide sequencing data.},
-        url={http://aem.asm.org/content/early/2017/06/12/AEM.01096-17},
-        journal={Applied and Environmental Microbiology}, publisher={ASM},
-        author={Carroll, Laura M., Jasna Kovac, Rachel A. Miller, Martin Wiedmann},
-        year={2017}, month={Jun}} ,
-       }</citation>
-    </citations>
-
-
-
-</tool>
diff -r d4af9796b682 -r 9307aff93567 btyper/._btyper.xml
Binary file btyper/._btyper.xml has changed
diff -r d4af9796b682 -r 9307aff93567 btyper/btyper.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/btyper/btyper.xml	Wed Nov 13 20:38:49 2024 +0000
@@ -0,0 +1,36 @@
+<tool id="btyper" name="BTyper" version="3.4.0">
+    <requirements>
+      <requirement type="package">btyper3</requirement>
+    </requirements>
+    <command detect_errors="exit_code"><![CDATA[
+
+      btyper3 -i $draft
+      -o "./"; cat btyper3_final_results/*.txt > results.txt; 
+
+    ]]></command>
+    <inputs>
+       <param name="draft" type="data" format="fasta" label="FASTA" />
+    </inputs>
+    <outputs>
+      <data format="tabular" label="BTyper Results" name="results" from_work_dir="*.txt"/>
+    </outputs>
+    <help><![CDATA[
+      BTyper is a that employs a combination of (i) virulence gene-based typing, (ii) multi-locus sequence typing (MLST), (iii) panC clade typing, and (iv) rpoB allelic typing to rapidly classify B. cereus group isolates using nucleotide sequencing data. 
+
+      The Draft Genome option concatenates contigs in a single fasta file and produces a single report. The Complete Genome option assumes a single chromosome, and plasmids if present, and the report contains a section for each fasta header in the input file.
+
+    ]]></help>
+    <citations>
+       <citation type="bibtex">
+        @misc{carrol_kovac_miller_wiedman_2017,
+        title={Rapid, high-throughput identification of anthrax-causing and emetic Bacillus cereus group genome assemblies using BTyper, a computational tool for virulence-based classification of Bacillus cereus group isolates using nucleotide sequencing data.},
+        url={http://aem.asm.org/content/early/2017/06/12/AEM.01096-17},
+        journal={Applied and Environmental Microbiology}, publisher={ASM},
+        author={Carroll, Laura M., Jasna Kovac, Rachel A. Miller, Martin Wiedmann},
+        year={2017}, month={Jun}} ,
+       }</citation>
+    </citations>
+
+
+
+</tool>