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1 <tool id="data_manager_amrfinderplus" name="AMRFinderPlus Data Manger" tool_type="manage_data" version="0.0.3" profile="20.01">
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2 <requirements>
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3 <requirement type="package">blast</requirement>
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4 <requirement type="package">hmmer</requirement>
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5 </requirements>
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6 <command detect_errors="exit_code"><![CDATA[
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7 python $__tool_directory__/data_manager_amrfinderplus.py --name $amrdbname --out ${output_file};
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8 ]]></command>
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9 <inputs>
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10 <param name="amrdbname" type="text" label="Name of AMRFinderPlus database"/>
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11 </inputs>
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12 <outputs>
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13 <data name="output_file" format="data_manager_json"/>
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14 </outputs>
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15 <tests>
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16 <test>
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17 </test>
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18 </tests>
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19 <help>
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20 </help>
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21 <citations>
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22 Refer to https://ftp.ncbi.nlm.nih.gov/pathogen/Antimicrobial_resistance/AMRFinderPlus/database/latest/ for latest database version number.
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23 </citations>
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24 </tool>
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