Mercurial > repos > estrain > data_manager_amrfinderplus
comparison data_manager_amrfinderplus/data_manager/data_manager_amrfinderplus.xml @ 0:36ba79e745fd draft
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author | estrain |
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date | Mon, 23 May 2022 02:20:25 +0000 |
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children | 650186ccc063 |
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-1:000000000000 | 0:36ba79e745fd |
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1 <tool id="data_manager_amrfinderplus" name="AMRFinderPlus Data Manger" tool_type="manage_data" version="0.0.3" profile="20.01"> | |
2 <requirements> | |
3 <requirement type="package">blast</requirement> | |
4 <requirement type="package">hmmer</requirement> | |
5 </requirements> | |
6 <command detect_errors="exit_code"><![CDATA[ | |
7 python $__tool_directory__/data_manager_amrfinderplus.py --name $amrdbname --out ${output_file}; | |
8 ]]></command> | |
9 <inputs> | |
10 <param name="amrdbname" type="text" label="Name of AMRFinderPlus database"/> | |
11 </inputs> | |
12 <outputs> | |
13 <data name="output_file" format="data_manager_json"/> | |
14 </outputs> | |
15 <tests> | |
16 <test> | |
17 </test> | |
18 </tests> | |
19 <help> | |
20 </help> | |
21 <citations> | |
22 Refer to https://ftp.ncbi.nlm.nih.gov/pathogen/Antimicrobial_resistance/AMRFinderPlus/database/latest/ for latest database version number. | |
23 </citations> | |
24 </tool> |