# HG changeset patch
# User estrain
# Date 1653298875 0
# Node ID 2c887282d3ef1a3dd569a2fc1730826ad2ae517e
# Parent  3169614341661f90a9ccdc3cbc0f44bed46f6c1a
Uploaded

diff -r 316961434166 -r 2c887282d3ef data_manager_amrfinderplus/data_manager/data_manager_amrfinderplus.py
--- a/data_manager_amrfinderplus/data_manager/data_manager_amrfinderplus.py	Mon May 23 09:35:13 2022 +0000
+++ b/data_manager_amrfinderplus/data_manager/data_manager_amrfinderplus.py	Mon May 23 09:41:15 2022 +0000
@@ -88,11 +88,8 @@
         config = json.load(fh)
 
     output_directory = config.get("output_data", [{}])[0].get("extra_files_path", None)
+    os.mkdir( output_directory )
     data_manager_dict = {}
-    data_manager_dict["data_tables"] = config.get("data_tables", {})
-    data_manager_dict["data_tables"][args.datatable_name] = data_manager_dict[
-        "data_tables"
-    ].get(args.datatable_name, [])
 
     #Fetch the files and build blast databases
     version=download_from_ncbi()