Mercurial > repos > estrain > data_manager_mlst

view data_manager_mlst/data_manager/data_manager_mlst.xml @ 0:56271dcbc91c draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author estrain
date Thu, 18 Jan 2024 02:22:30 +0000
parents
children
line wrap: on
line source

<tool id="data_manager_mlst" name="mlst Data Manger" tool_type="manage_data" version="0.0.1" profile="20.01">
    <requirements>
        <requirement type="package">blast</requirement>
        <requirement type="package">mlst</requirement>
    </requirements>
    <command detect_errors="exit_code"><![CDATA[
        python $__tool_directory__/data_manager_mlst.py --out ${output_file};
    ]]></command>
    <inputs>
    </inputs>
    <outputs>
        <data name="output_file" format="data_manager_json"/>
    </outputs>
    <tests>
        <test>
        </test>
    </tests>
    <help>
    </help>
    <citations>
      <citation type="bibtex">
       @UNPUBLISHED{Seemann2016,
         author = "Seemann T",
         title = "MLST: Scan contig files against PubMLST typing schemes",
         year = "2016",
         url = {https://github.com/tseemann/mlst}
       }
      </citation>
    </citations>
</tool>