# HG changeset patch
# User estrain
# Date 1705547503 0
# Node ID 1930c02df64ef3857c64088c39307451087b9c2a
# Parent  a2da81d3378be43934c84689382cc3ba78dd2bef
Uploaded

diff -r a2da81d3378b -r 1930c02df64e data_manager_mlst/data_manager/data_manager_mlst.py
--- a/data_manager_mlst/data_manager/data_manager_mlst.py	Thu Jan 18 03:08:40 2024 +0000
+++ b/data_manager_mlst/data_manager/data_manager_mlst.py	Thu Jan 18 03:11:43 2024 +0000
@@ -10,7 +10,7 @@
 def download_pubmlst_databases():
     """Download databases from pubmlst."""
     try:
-        subprocess.run(["cp", "-R", "/mnt/data/mlst/db","pubmlst"], check=True)
+        subprocess.run(["mlst-download_pub_mlst", "-d", "pubmlst"], check=True)
     except subprocess.CalledProcessError as e:
         print(f"Error downloading databases: {e}")
         sys.exit(1)