Mercurial > repos > estrain > lissero
comparison lissero/lissero.xml @ 14:6c8e5bfff8a8 draft default tip
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| author | estrain |
|---|---|
| date | Thu, 08 Feb 2024 21:07:43 +0000 |
| parents | 92600b70b259 |
| children |
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| 13:92600b70b259 | 14:6c8e5bfff8a8 |
|---|---|
| 7 #if $settings.advanced == "advanced" | 7 #if $settings.advanced == "advanced" |
| 8 --min_id $settings.min_id | 8 --min_id $settings.min_id |
| 9 --min_cov $settings.min_cov | 9 --min_cov $settings.min_cov |
| 10 #end if | 10 #end if |
| 11 '$input1' > output1; | 11 '$input1' > output1; |
| 12 python $__tool_directory__/variant4b.py output1 output2.txt ${input1}; | 12 python $__tool_directory__/variant4b.py output1 output2.txt ${input1.element_identifier}; |
| 13 ]]></command> | 13 ]]></command> |
| 14 <inputs> | 14 <inputs> |
| 15 <param type="data" name="input1" format="fasta" /> | 15 <param type="data" name="input1" format="fasta" /> |
| 16 <conditional name="settings"> | 16 <conditional name="settings"> |
| 17 <param name="advanced" type="select" label="Specify advanced parameters"> | 17 <param name="advanced" type="select" label="Specify advanced parameters"> |