Mercurial > repos > estrain > seqsero_v1
view SeqSero/libs/splitPairedEndReads.pl @ 0:c577b57b7c74 draft
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author | estrain |
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date | Wed, 06 Dec 2017 15:59:29 -0500 |
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use strict; use warnings; my $file = $ARGV[0]; open(FILE, "<$file") || die "cannot open $file\n"; open(OUT1, ">$file\_1") || die "cannot open $file\_1\n"; open(OUT2, ">$file\_2") || die "cannot open $file\_2\n"; while(<FILE>){ chomp; print OUT1 "$_\/1\n"; print OUT2 "$_\/2\n"; my $newline = <FILE>; chomp($newline); print OUT1 substr($newline, 0, length($newline)/2)."\n"; print OUT2 substr($newline, length($newline)/2, length($newline)/2)."\n"; $newline = <FILE>; chomp($newline); print OUT1 "$newline\/1\n"; print OUT2 "$newline\/2\n"; $newline = <FILE>; chomp($newline); print OUT1 substr($newline, 0, length($newline)/2)."\n"; print OUT2 substr($newline, length($newline)/2, length($newline)/2)."\n"; } close(FILE);