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comparison srst2v2.xml @ 4:65cb7bb11e6b draft

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Uploaded
author estrain
date Sun, 19 May 2019 11:24:38 -0400
parents 8bf4865cc3e3
children 53b629d3da68
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3:8bf4865cc3e3 4:65cb7bb11e6b
107 <option value="single">Single FASTQ</option> 107 <option value="single">Single FASTQ</option>
108 <option value="paired">Forward and Reverse FASTQ</option> 108 <option value="paired">Forward and Reverse FASTQ</option>
109 <option value="paired_coll">Paired FASTQ Collection</option> 109 <option value="paired_coll">Paired FASTQ Collection</option>
110 </param> 110 </param>
111 <when value="single"> 111 <when value="single">
112 <param name="fastq1" type="data" format="fastq,fastqsanger" label="FASTQ file" help="FASTQ" /> 112 <param name="fastq1" type="data" format="fastq,fastqsanger,fastq.gz,fastqsanger.gz" label="FASTQ file" help="FASTQ" />
113 </when> 113 </when>
114 <when value="paired"> 114 <when value="paired">
115 <param name="fastq1" type="data" format="fastq,fastqsanger" label="Forward FASTQ file" help="FASTQ" /> 115 <param name="fastq1" type="data" format="fastq,fastqsanger,fastq.gz,fastqsanger.gz" label="Forward FASTQ file" help="FASTQ" />
116 <param name="fastq2" type="data" format="fastq,fastqsanger" label="Reverse FASTQ file" help="FASTQ" /> 116 <param name="fastq2" type="data" format="fastq,fastqsanger,fastq.gz,fastqsanger.gz" label="Reverse FASTQ file" help="FASTQ" />
117 </when> 117 </when>
118 <when value="paired_coll"> 118 <when value="paired_coll">
119 <param name="coll" label="Paired FASTQ" type="data_collection" format="fastq,fastqsanger" collection_type="paired" /> 119 <param name="coll" label="Paired FASTQ" type="data_collection" format="fastq,fastqsanger,fastq.gz,fastqsanger.gz" collection_type="paired" />
120 </when> 120 </when>
121 </conditional> 121 </conditional>
122 122
123 <conditional name="job_type"> 123 <conditional name="job_type">
124 <param name="job" type="select" label="MLST, MLST with ST, or Gene Presence/Absence?"> 124 <param name="job" type="select" label="MLST, MLST with ST, or Gene Presence/Absence?">