# HG changeset patch # User estrain # Date 1758208778 0 # Node ID d8ff95d968484956edbd0ea13b6d3a49430ba5e3 # Parent 8c2ad48a2eba15d4ea12487ebdc352eaaa8298b6 Uploaded diff -r 8c2ad48a2eba -r d8ff95d96848 sum_fastqc/sum_fastqc.pl --- a/sum_fastqc/sum_fastqc.pl Thu Sep 18 15:14:19 2025 +0000 +++ b/sum_fastqc/sum_fastqc.pl Thu Sep 18 15:19:38 2025 +0000 @@ -29,7 +29,7 @@ sub print_stats { $infile = shift; # First 10 lines of raw FASTQC contain basic overview - @sumlines=`head -n 10 $infile`; + @sumlines=`head -n 11 $infile`; chomp(@sumlines); # Sequence level Q scores are buried in the middle of the file diff -r 8c2ad48a2eba -r d8ff95d96848 sum_fastqc/sum_fastqc.xml --- a/sum_fastqc/sum_fastqc.xml Thu Sep 18 15:14:19 2025 +0000 +++ b/sum_fastqc/sum_fastqc.xml Thu Sep 18 15:19:38 2025 +0000 @@ -1,4 +1,4 @@ - + summarizes raw FASTQC output