Mercurial > repos > ethevenot > biosigner

annotate build.xml @ 3:fa80bd02055f draft default tip

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planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit 23d58cfd97411ad5d272971896914ce99e30b0ab
author ethevenot
date Tue, 06 Jun 2017 11:44:00 -0400
parents 48e4be935243
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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48e4be935243 planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
diff changeset
1 <project name="w4m.biosigner" default="all">
48e4be935243 planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
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2
48e4be935243 planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
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3 <property name="tool.xml" value="biosigner_config.xml"/>
48e4be935243 planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
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4 <property name="conda.dir" value="${user.home}/w4m-conda"/>
48e4be935243 planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
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5
48e4be935243 planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
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6 <!--~~~
48e4be935243 planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
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7 ~ ALL ~
48e4be935243 planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
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8 ~~~~~-->
48e4be935243 planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
diff changeset
9
48e4be935243 planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
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10 <target name="all"/>
48e4be935243 planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
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11
48e4be935243 planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
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12 <!--~~~~
48e4be935243 planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
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13 ~ TEST ~
48e4be935243 planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
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14 ~~~~~-->
48e4be935243 planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
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15
3
fa80bd02055f planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit 23d58cfd97411ad5d272971896914ce99e30b0ab
ethevenot
parents: 0
diff changeset
16 <target name="test" depends="plain.test,galaxy.test"/>
fa80bd02055f planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit 23d58cfd97411ad5d272971896914ce99e30b0ab
ethevenot
parents: 0
diff changeset
17 <target name="galaxy.test" depends="planemo.lint,planemo.test"/>
fa80bd02055f planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit 23d58cfd97411ad5d272971896914ce99e30b0ab
ethevenot
parents: 0
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18
fa80bd02055f planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit 23d58cfd97411ad5d272971896914ce99e30b0ab
ethevenot
parents: 0
diff changeset
19 <!--~~~~~~~~~~
fa80bd02055f planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit 23d58cfd97411ad5d272971896914ce99e30b0ab
ethevenot
parents: 0
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20 ~ PLAIN TEST ~
fa80bd02055f planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit 23d58cfd97411ad5d272971896914ce99e30b0ab
ethevenot
parents: 0
diff changeset
21 ~~~~~~~~~~~-->
fa80bd02055f planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit 23d58cfd97411ad5d272971896914ce99e30b0ab
ethevenot
parents: 0
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22
fa80bd02055f planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit 23d58cfd97411ad5d272971896914ce99e30b0ab
ethevenot
parents: 0
diff changeset
23 <target name="plain.test">
fa80bd02055f planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit 23d58cfd97411ad5d272971896914ce99e30b0ab
ethevenot
parents: 0
diff changeset
24 <exec executable="test/test-biosigner" failonerror="true"/>
fa80bd02055f planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit 23d58cfd97411ad5d272971896914ce99e30b0ab
ethevenot
parents: 0
diff changeset
25 </target>
0
48e4be935243 planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
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26
48e4be935243 planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
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27 <!--~~~~~~~~~~~~
48e4be935243 planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
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28 ~ PLANEMO LINT ~
48e4be935243 planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
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29 ~~~~~~~~~~~~~-->
48e4be935243 planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
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30
48e4be935243 planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
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31 <target name="planemo.lint">
48e4be935243 planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
diff changeset
32 <exec executable="planemo" failonerror="true">
48e4be935243 planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
diff changeset
33 <arg value="lint"/>
48e4be935243 planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
diff changeset
34 <arg value="${tool.xml}"/>
48e4be935243 planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
diff changeset
35 </exec>
48e4be935243 planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
diff changeset
36 </target>
48e4be935243 planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
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37
48e4be935243 planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
diff changeset
38 <!--~~~~~~~~~~~~
48e4be935243 planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
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39 ~ PLANEMO TEST ~
48e4be935243 planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
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40 ~~~~~~~~~~~~~-->
48e4be935243 planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
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41
48e4be935243 planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
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42 <target name="planemo.test" depends="planemo.conda.install">
48e4be935243 planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
diff changeset
43 <exec executable="planemo" failonerror="true">
48e4be935243 planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
diff changeset
44 <arg value="test"/>
48e4be935243 planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
diff changeset
45 <arg value="--conda_prefix"/>
48e4be935243 planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
diff changeset
46 <arg value="${conda.dir}"/>
48e4be935243 planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
diff changeset
47 <arg value="--galaxy_branch"/>
48e4be935243 planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
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48 <arg value="release_16.01"/>
48e4be935243 planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
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49 <arg value="--conda_dependency_resolution"/>
48e4be935243 planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
diff changeset
50 <arg value="${tool.xml}"/>
48e4be935243 planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
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51 </exec>
48e4be935243 planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
diff changeset
52 </target>
48e4be935243 planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
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53
48e4be935243 planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
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54 <!--~~~~~~~~~~~~~~~~~~~~~
48e4be935243 planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
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55 ~ PLANEMO CONDA INSTALL ~
48e4be935243 planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
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56 ~~~~~~~~~~~~~~~~~~~~~~-->
48e4be935243 planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
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57
48e4be935243 planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
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58 <target name="planemo.conda.install" depends="planemo.conda.init">
48e4be935243 planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
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59 <exec executable="planemo" failonerror="true">
48e4be935243 planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
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60 <arg value="conda_install"/>
48e4be935243 planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
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61 <arg value="--conda_prefix"/>
48e4be935243 planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
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62 <arg value="${conda.dir}"/>
48e4be935243 planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
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63 <arg value="${tool.xml}"/>
48e4be935243 planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
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64 </exec>
48e4be935243 planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
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65 </target>
48e4be935243 planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
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66
48e4be935243 planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
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67 <!--~~~~~~~~~~~~~~~~~~
48e4be935243 planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
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68 ~ PLANEMO CONDA INIT ~
48e4be935243 planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
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69 ~~~~~~~~~~~~~~~~~~~-->
48e4be935243 planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
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70
48e4be935243 planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
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71 <available file="${conda.dir}" property="conda.is.installed"/>
48e4be935243 planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
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72 <target name="planemo.conda.init" unless="conda.is.installed">
48e4be935243 planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
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73 <exec executable="planemo" failonerror="true">
48e4be935243 planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
diff changeset
74 <arg value="conda_init"/>
48e4be935243 planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
diff changeset
75 <arg value="--conda_prefix"/>
48e4be935243 planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
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76 <arg value="${conda.dir}"/>
48e4be935243 planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
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77 </exec>
48e4be935243 planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
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78 </target>
48e4be935243 planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
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79
48e4be935243 planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
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80 <!--~~~~~
48e4be935243 planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
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81 ~ CLEAN ~
48e4be935243 planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
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82 ~~~~~~-->
48e4be935243 planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
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83
48e4be935243 planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
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84 <target name="clean">
48e4be935243 planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
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85 <delete dir="${conda.dir}"/>
48e4be935243 planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
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86 </target>
48e4be935243 planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
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87
48e4be935243 planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
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88 </project>