Mercurial > repos > ethevenot > checkformat
diff README.md @ 1:e194eec8e70c draft
planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 8ebfbfa8d9449c9bbfbf569851a30b1e33df0b3f
| author | ethevenot |
|---|---|
| date | Sat, 06 Aug 2016 11:54:28 -0400 |
| parents | 0d8099822c49 |
| children | 80a38d36f946 |
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--- a/README.md Sat Jul 30 12:06:35 2016 -0400 +++ b/README.md Sat Aug 06 11:54:28 2016 -0400 @@ -1,11 +1,13 @@ -## Checking the formats of the dataMatrix, sampleMetadata, and variableMetadata files -#### A Galaxy module from the [Workflow4metabolomics](http://workflow4metabolomics.org) project +Checking the formats of the dataMatrix, sampleMetadata, and variableMetadata files +================================================================================== + +A Galaxy module from the [Workflow4metabolomics](http://workflow4metabolomics.org) infrastructure Status: [](https://travis-ci.org/workflow4metabolomics/checkformat). ### Description -**Version:** 2.0.2 +**Version:** 2.0.4 **Date:** 2016-07-29 **Author:** Etienne A. Thevenot (CEA, LIST, MetaboHUB, W4M Core Development Team) **Email:** [etienne.thevenot(at)cea.fr](mailto:etienne.thevenot@cea.fr) @@ -18,23 +20,39 @@ ### Installation -* Configuration file: **checkFormat_config.xml** -* Image file: **static/images/checkFormat_workflowPositionImage.png** -* Wrapper file: **checkFormat_wrapper.R** +* Configuration file: `checkformat_config.xml` +* Image file: `static/images/checkformat_workflowPositionImage.png` +* Wrapper file: `checkformat_wrapper.R` * R packages - + **batch** from CRAN -> install.packages("batch", dep=TRUE) + + **batch** from CRAN + + ```r + install.packages("batch", dep=TRUE) + ``` ### Tests -The code in the wrapper can be tested by running the **tests/checkFormat_tests.R** in R +The code in the wrapper can be tested by running the `runit/checkformat_tests.R` R file + +You will need to install **RUnit** package in order to make it run: +```r +install.packages('RUnit', dependencies = TRUE) +``` + +### Working example + +See the **W4M00001a_sacurine-subset-statistics**, **W4M00001b_sacurine-complete**, **W4M00002_mtbls2**, or **W4M00003_diaplasma** shared histories in the **Shared Data/Published Histories** menu (https://galaxy.workflow4metabolomics.org/history/list_published) ### News +##### CHANGES IN VERSION 2.0.4 + +INTERNAL MODIFICATION + + * Minor internal modifications + ##### CHANGES IN VERSION 2.0.2 INTERNAL MODIFICATION - o Creating tests for R code - -*** \ No newline at end of file + * Creating tests for R code \ No newline at end of file