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planemo upload for repository https://github.com/workflow4metabolomics/multivariate.git commit 6596dbd39d20ee1962d9ebdd87eec04821239760
author ethevenot
date Wed, 27 Jul 2016 11:22:56 -0400
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-1:000000000000 0:fafba524dca6
1 FROM ubuntu:14.04
2
3 MAINTAINER Etienne Thevenot (etienne.thevenot@cea.fr)
4
5 # Setup package repos
6 RUN echo "deb http://mirrors.ebi.ac.uk/CRAN/bin/linux/ubuntu trusty/" >> /etc/apt/sources.list
7 RUN apt-key adv --keyserver keyserver.ubuntu.com --recv-keys E084DAB9
8
9 # Update and upgrade system
10 RUN apt-get update
11 RUN apt-get -y upgrade
12
13 # Install R and other needed packages
14 RUN apt-get -y install r-base
15 RUN R -e "install.packages('batch', lib='/usr/lib/R/library', dependencies = TRUE, repos='http://mirrors.ebi.ac.uk/CRAN')"
16 RUN R -e "source('http://bioconductor.org/biocLite.R') ; biocLite('ropls')"
17
18 # Clone tool
19 RUN apt-get -y install git
20 RUN git clone -b docker https://github.com/workflow4metabolomics/multivariate /files/multivariate
21
22 # Clean up
23 RUN apt-get clean && apt-get autoremove -y && rm -rf /var/lib/{apt,dpkg,cache,log}/ /tmp/* /var/tmp/*
24
25 # Define Entry point script
26 ENTRYPOINT ["/files/multivariate/multivariate_wrapper.R"]