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comparison test/test-profia @ 0:39ccace77270 draft

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planemo upload for repository https://github.com/workflow4metabolomics/profia.git commit 2757590af8c7ba9833ba3bebd7da7f96b20d1128-dirty
author ethevenot
date Sun, 26 Mar 2017 17:37:12 -0400
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-1:000000000000 0:39ccace77270
1 #!/bin/bash
2
3 # Constants {{{1
4 ################################################################
5
6 PROG_PATH=$(dirname $0)
7
8 # MAIN {{{1
9 ################################################################
10
11 $PROG_PATH/../profia_wrapper.R zipfile $PROG_PATH/../test-data/input-plasFIA.zip ppmN 2 ppmGroupN 1 fracGroupN 0.1 kI 2 dataMatrix_out $PROG_PATH/output-dataMatrix.tsv
12
13 if ! diff "$PROG_PATH/output-dataMatrix.tsv" "$PROG_PATH/../test-data/output-dataMatrix.tsv" ; then
14 echo "Incorrect output data matrix." >&2
15 exit 1
16 fi