Mercurial > repos > ethevenot > transformation
comparison README.md @ 0:eacea1349a7c draft
planemo upload for repository https://github.com/workflow4metabolomics/transformation.git commit 83f2d1045c0bf086bbe2de5204cd5c1d8354116f
| author | ethevenot |
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| date | Fri, 29 Jul 2016 12:11:01 -0400 |
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| children | d9e05021553c |
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| 1 ## Transformation of the data matrix | |
| 2 #### A Galaxy module from the [Workflow4metabolomics](http://workflow4metabolomics.org) project | |
| 3 | |
| 4 Status: [](https://travis-ci.org/workflow4metabolomics/transformation). | |
| 5 | |
| 6 ### Description | |
| 7 | |
| 8 **Version:** 2.0.2 | |
| 9 **Date:** 2016-07-27 | |
| 10 **Author:** Etienne A. Thevenot (CEA, LIST, MetaboHUB, W4M Core Development Team) | |
| 11 **Email:** [etienne.thevenot(at)cea.fr](mailto:etienne.thevenot@cea.fr) | |
| 12 **Citation:** Thevenot E.A., Roux A., Xu Y., Ezan E. and Junot C. (2015). Analysis of the human adult urinary metabolome variations with age, body mass index and gender by implementing a comprehensive workflow for univariate and OPLS statistical analyses. *Journal of Proteome Research*, **14**:3322-3335. [doi:10.1021/acs.jproteome.5b00354](http://dx.doi.org/10.1021/acs.jproteome.5b00354) | |
| 13 **Licence:** CeCILL | |
| 14 **Reference history:** [W4M00001b_sacurine_complete](http://galaxy.workflow4metabolomics.org/history/list_published) | |
| 15 **Funding:** Agence Nationale de la Recherche ([MetaboHUB](http://www.metabohub.fr/index.php?lang=en&Itemid=473) national infrastructure for metabolomics and fluxomics, ANR-11-INBS-0010 grant) | |
| 16 | |
| 17 ### Installation | |
| 18 | |
| 19 * Configuration file: **transformation_config.xml** | |
| 20 * Image files: **static/images/transformation_workflowPositionImage.png** | |
| 21 * Wrapper file: **transformation_wrapper.R** | |
| 22 * R packages | |
| 23 + **batch** from CRAN | |
| 24 > install.packages("batch", dep=TRUE) | |
| 25 | |
| 26 ### Tests | |
| 27 | |
| 28 The code in the wrapper can be tested by running the **tests/transformation_tests.R** in R | |
| 29 | |
| 30 ### News | |
| 31 | |
| 32 ##### CHANGES IN VERSION 2.0.2 | |
| 33 | |
| 34 INTERNAL MODIFICATION | |
| 35 | |
| 36 o Creating tests for R code | |
| 37 | |
| 38 *** |