Mercurial > repos > ethevenot > transformation
comparison README.md @ 0:eacea1349a7c draft
planemo upload for repository https://github.com/workflow4metabolomics/transformation.git commit 83f2d1045c0bf086bbe2de5204cd5c1d8354116f
author | ethevenot |
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date | Fri, 29 Jul 2016 12:11:01 -0400 |
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1 ## Transformation of the data matrix | |
2 #### A Galaxy module from the [Workflow4metabolomics](http://workflow4metabolomics.org) project | |
3 | |
4 Status: [![Build Status](https://travis-ci.org/workflow4metabolomics/transformation.svg?branch=master)](https://travis-ci.org/workflow4metabolomics/transformation). | |
5 | |
6 ### Description | |
7 | |
8 **Version:** 2.0.2 | |
9 **Date:** 2016-07-27 | |
10 **Author:** Etienne A. Thevenot (CEA, LIST, MetaboHUB, W4M Core Development Team) | |
11 **Email:** [etienne.thevenot(at)cea.fr](mailto:etienne.thevenot@cea.fr) | |
12 **Citation:** Thevenot E.A., Roux A., Xu Y., Ezan E. and Junot C. (2015). Analysis of the human adult urinary metabolome variations with age, body mass index and gender by implementing a comprehensive workflow for univariate and OPLS statistical analyses. *Journal of Proteome Research*, **14**:3322-3335. [doi:10.1021/acs.jproteome.5b00354](http://dx.doi.org/10.1021/acs.jproteome.5b00354) | |
13 **Licence:** CeCILL | |
14 **Reference history:** [W4M00001b_sacurine_complete](http://galaxy.workflow4metabolomics.org/history/list_published) | |
15 **Funding:** Agence Nationale de la Recherche ([MetaboHUB](http://www.metabohub.fr/index.php?lang=en&Itemid=473) national infrastructure for metabolomics and fluxomics, ANR-11-INBS-0010 grant) | |
16 | |
17 ### Installation | |
18 | |
19 * Configuration file: **transformation_config.xml** | |
20 * Image files: **static/images/transformation_workflowPositionImage.png** | |
21 * Wrapper file: **transformation_wrapper.R** | |
22 * R packages | |
23 + **batch** from CRAN | |
24 > install.packages("batch", dep=TRUE) | |
25 | |
26 ### Tests | |
27 | |
28 The code in the wrapper can be tested by running the **tests/transformation_tests.R** in R | |
29 | |
30 ### News | |
31 | |
32 ##### CHANGES IN VERSION 2.0.2 | |
33 | |
34 INTERNAL MODIFICATION | |
35 | |
36 o Creating tests for R code | |
37 | |
38 *** |