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comparison univariate_config.xml @ 4:3017385625f6 draft

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planemo upload for repository https://github.com/workflow4metabolomics/univariate.git commit a81d4cc1df719dcc66def660927abda74972afaa
author ethevenot
date Thu, 11 Jan 2018 10:21:17 -0500
parents 140290de7986
children 5687435b182c
comparison
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3:140290de7986 4:3017385625f6
1 <tool id="Univariate" name="Univariate" version="2.2.0"> 1 <tool id="Univariate" name="Univariate" version="2.2.4">
2 <description>Univariate statistics</description> 2 <description>Univariate statistics</description>
3 3
4 <requirements> 4 <requirements>
5 <requirement type="package" version="3.2.2">R</requirement>
6 <requirement type="package">r-batch</requirement> 5 <requirement type="package">r-batch</requirement>
7 <requirement type="package">r-PMCMR</requirement> 6 <requirement type="package">r-PMCMR</requirement>
8 </requirements> 7 </requirements>
9 8
10 <stdio> 9 <stdio>
218 217
219 ---- 218 ----
220 NEWS 219 NEWS
221 ---- 220 ----
222 221
222 CHANGES IN VERSION 2.2.4
223 ========================
224
225 MINOR MODIFICATION
226
227 Internal minor modifications for building and testing
228
229
223 CHANGES IN VERSION 2.2.0 230 CHANGES IN VERSION 2.2.0
224 ======================== 231 ========================
225 232
226 MAJOR MODIFICATION 233 MAJOR MODIFICATION
227 234
232 All values in the 'dif', adjusted p-value, and 'sig' columns are now displayed (previously, the values were set to NA when the p-value of the omnibus test was not significant) 239 All values in the 'dif', adjusted p-value, and 'sig' columns are now displayed (previously, the values were set to NA when the p-value of the omnibus test was not significant)
233 240
234 NEW FEATURE 241 NEW FEATURE
235 242
236 Graphic: a single pdf file containing the graphics of all significant tests is now produced as '_figure.pdf' output: boxplots (respectively scatterplots with the regression line in red and the R2 value) are displayed when the factor of interest is qualitative (respectively quantitative). The corrected p-value is indicated in the title of each plot 243 Graphic: a single pdf file containing the graphics of all significant tests is now produced as '_figure.pdf' output: boxplots (respectively scatterplots with the regression line in red and the R2 value) are displayed when the factor of interest is qualitative (respectively quantitative). The corrected p-value is indicated in the title of each plot
237
238 244
239 CHANGES IN VERSION 2.1.4 245 CHANGES IN VERSION 2.1.4
240 ======================== 246 ========================
241 247
242 NEW FEATURE 248 NEW FEATURE
277 organization = {R Foundation for Statistical Computing}, 283 organization = {R Foundation for Statistical Computing},
278 address = {Vienna, Austria}, 284 address = {Vienna, Austria},
279 year = {2016}, 285 year = {2016},
280 url = {https://www.R-project.org/}, 286 url = {https://www.R-project.org/},
281 }</citation> 287 }</citation>
282 <citation type="bibtex">@Article{Thevenot2015, 288 <citation type="doi">10.1021/acs.jproteome.5b00354</citation>
283 Title = {Analysis of the human adult urinary metabolome variations with age, body mass index and gender by implementing a comprehensive workflow for univariate and OPLS statistical analyses}, 289 <citation type="doi">10.1016/j.biocel.2017.07.002</citation>
284 Author = {Thevenot, Etienne A. and Roux, Aurelie and Xu, Ying and Ezan, Eric and Junot, Christophe},
285 Journal = {Journal of Proteome Research},
286 Year = {2015},
287 Note = {PMID: 26088811},
288 Number = {8},
289 Pages = {3322-3335},
290 Volume = {14},
291
292 Doi = {10.1021/acs.jproteome.5b00354},
293 Url = {http://pubs.acs.org/doi/full/10.1021/acs.jproteome.5b00354}
294 }</citation>
295 <citation type="doi">10.1093/bioinformatics/btu813</citation> 290 <citation type="doi">10.1093/bioinformatics/btu813</citation>
296 </citations> 291 </citations>
297 292
298 </tool> 293 </tool>