Mercurial > repos > ethevenot > univariate
diff runit/univariate_tests.R @ 2:09799fc16bc6 draft
planemo upload for repository https://github.com/workflow4metabolomics/univariate.git commit 2c0d4d97c208edca1ada2035a7b7af9c4eb31afe
author | ethevenot |
---|---|
date | Sat, 06 Aug 2016 12:42:42 -0400 |
parents | |
children | 140290de7986 |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/runit/univariate_tests.R Sat Aug 06 12:42:42 2016 -0400 @@ -0,0 +1,44 @@ +test_input_kruskal <- function() { + + testDirC <- "input" + argLs <- list(facC = "ageGroup", + tesC = "kruskal", + adjC = "fdr", + thrN = "0.05") + + argLs <- c(defaultArgF(testDirC), argLs) + outLs <- wrapperCallF(argLs) + + checkEqualsNumeric(outLs[["varDF"]]["HMDB01032", "ageGroup_kruskal_senior.experienced_pva"], 0.1231246, tolerance = 1e-6) + +} + +test_example1_wilcoxDif <- function() { + + testDirC <- "example1" + argLs <- list(facC = "jour", + tesC = "wilcoxon", + adjC = "fdr", + thrN = "0.05") + + argLs <- c(defaultArgF(testDirC), argLs) + outLs <- wrapperCallF(argLs) + + checkEqualsNumeric(outLs[["varDF"]]["MT3", "jour_wilcoxon_J3.J10_dif"], 0.216480042, tolerance = 1e-8) + +} + +test_example1_ttestFdr <- function() { + + testDirC <- "example1" + argLs <- list(facC = "jour", + tesC = "ttest", + adjC = "fdr", + thrN = "0.05") + + argLs <- c(defaultArgF(testDirC), argLs) + outLs <- wrapperCallF(argLs) + + checkEqualsNumeric(outLs[["varDF"]]["MT3", "jour_ttest_J3.J10_fdr"], 0.7605966, tolerance = 1e-6) + +}