Mercurial > repos > fabio > btman
diff query.xml @ 2:a4abcc1e7459 draft
Uploaded 20180404
author | fabio |
---|---|
date | Tue, 03 Apr 2018 20:39:28 -0400 |
parents | 315246810bfa |
children | 69a3505ac594 |
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--- a/query.xml Tue Apr 03 20:27:52 2018 -0400 +++ b/query.xml Tue Apr 03 20:39:28 2018 -0400 @@ -35,16 +35,16 @@ <option value="1">By manually inserted text</option> </param> <when value="0"> - <param format="tabular" name="txtfiles" type="data" label="Select files" multiple="true" optional="false" help="Select one or more tabular files containing (ID, TRANSCRIPT) couples for each line. The content of these files will be merged and the result will represent a query to the AllSome Sequence Bloom Tree Search Engine that will return a collection containing a file for each ID. The content of these files as result of the tool will be a list of accession numbers." /> + <param format="tabular" name="txtfiles" type="data" label="Select files" multiple="true" optional="false" help="Select one or more tabular files containing (ID, TRANSCRIPT) couples for each line. The content of these files will be merged and the result will represent a query to the Sequence Bloom Tree that will return a collection containing a file for each ID. The content of these files as result of the tool will be a list of accession numbers." /> </when> <when value="1"> - <param name="sequences" type="text" area="True" size="5x25" label="Manually insert sequences" optional="false" help="Insert a list of (ID, TRANSCRIPT) couples in a tab delimited format, one for each line. The content of this text box will represent a query to the AllSome Sequence Bloom Tree Search Engine that will return a collection containing a file for each ID. The content of these files as result of the tool will be a list of accession numbers." /> + <param name="sequences" type="text" area="True" size="5x25" label="Manually insert sequences" optional="false" help="Insert a list of (ID, TRANSCRIPT) couples in a tab delimited format, one for each line. The content of this text box will represent a query to the Sequence Bloom Tree that will return a collection containing a file for each ID. The content of these files as result of the tool will be a list of accession numbers." /> </when> </conditional> <param name="sthreshold" size="3" type="float" value="0.7" min="0.0" max="1.0" label="Search threshold" help="This threshold controls the specificity. Lower values will produce more hits to the query. Higher values are more stringent and will produce fewer hits." /> </inputs> <outputs> - <collection name="output_collect" type="list" label="AllSome Sequence Bloom Tree Search Collection"> + <collection name="output_collect" type="list" label="BloomTree Manager - Query result collection"> <discover_datasets pattern="(?P<identifier_0>[^_]+)_(?P<ext>[^_]+)" directory="collection_content" ext="auto" /> </collection> </outputs>