|
0
|
1 <?xml version="1.0"?>
|
|
|
2 <tool name="GDCWebApp" id="data_source_gdcwebapp" tool_type="data_source" hidden="False" display_interface="False" version="1.0.0" force_history_refresh="True">
|
|
|
3 <description>an intuitive interface to filter, extract, and convert Genomic Data Commons experiments</description>
|
|
|
4 <requirements>
|
|
|
5 <requirement type="package" version="2.7.10">python</requirement>
|
|
6
|
6 <!--<requirement type="package" version="1.0.0">galaxy_json_data_source</requirement>-->
|
|
0
|
7 </requirements>
|
|
|
8 <stdio>
|
|
|
9 <exit_code range="1:" />
|
|
|
10 <exit_code range=":-1" />
|
|
|
11 </stdio>
|
|
6
|
12 <!--<version_command>json_data_source.py --version</version_command>-->
|
|
|
13 <!--<command>json_data_source.py "${__app__.config.output_size_limit}" --json_param_file "${output1}" --path "."</command>-->
|
|
|
14 <command interpreter="python">json_data_source_mod.py "${__app__.config.output_size_limit}" --json_param_file "${output1}" --path "." --appdata "${tool.name}"</command>
|
|
0
|
15 <inputs check_values="False" action="http://bioinf.iasi.cnr.it/gdcwebapp/app.php" >
|
|
|
16 <display>Go to GDCWebApp service $GALAXY_URL</display>
|
|
|
17 <param name="URL" type="hidden" value="" />
|
|
|
18 </inputs>
|
|
|
19 <outputs>
|
|
4
|
20 <data name="output1" format="auto" />
|
|
6
|
21 <collection name="list_output" type="list:list" label="${tool.name} output">
|
|
|
22 <discover_datasets pattern="(?P<archive_name>.*)_(?P<file_name>.*)\..*" ext="auto" visible="True" directory="${tool.name}" />
|
|
|
23 </collection>
|
|
0
|
24 </outputs>
|
|
|
25 <options sanitize="False" refresh="True" />
|
|
|
26 </tool>
|
