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0
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1 <?xml version="1.0"?>
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18
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2 <tool name="GDCWebApp" id="data_source_gdcwebapp" tool_type="data_source_async" hidden="False" display_interface="False" version="1.0.0" force_history_refresh="True">
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0
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3 <description>an intuitive interface to filter, extract, and convert Genomic Data Commons experiments</description>
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12
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4 <requirements>
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5 <requirement type="package" version="2.7.10">python</requirement>
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36
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6 <requirement type="package" version="1.0.0">galaxy_json_collect_data_source</requirement>
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12
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7 </requirements>
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0
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8 <stdio>
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9 <exit_code range="1:" />
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10 <exit_code range=":-1" />
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11 </stdio>
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10
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12 <command>
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13 <![CDATA[
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12
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14 mkdir -p tmp &&
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15 python json_collect_data_source.py '${__app__.config.output_size_limit}' --json_param_file '${output1}' --path '.' --appdata 'tmp'
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10
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16 ]]>
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17 </command>
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24
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18 <inputs check_values="False" action="http://bioinf.iasi.cnr.it/gdcwebapp/app.php">
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19 <display>Go to GDCWebApp service $GALAXY_URL</display>
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26
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20 <param name="GALAXY_URL" type="baseurl" value="/async/data_source_gdcwebapp" />
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21 </inputs>
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22 <outputs>
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10
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23 <collection name="list_output" type="list:list" label="${tool.name} Output Collection">
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16
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24 <discover_datasets pattern="(?P<identifier_0>[^_]+)_(?P<identifier_1>[^_]+)_(?P<ext>[^_]+)_(?P<dbkey>[^_]+)" ext="auto" visible="False" directory="tmp" />
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6
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25 </collection>
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28
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26 <data name="output1" format="auto" label="${tool.name} Output Data" />
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0
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27 </outputs>
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28 <options sanitize="False" refresh="True" />
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29 </tool>
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