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1 <?xml version="1.0"?>
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18
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2 <tool name="GDCWebApp" id="data_source_gdcwebapp" tool_type="data_source_async" hidden="False" display_interface="False" version="1.0.0" force_history_refresh="True">
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3 <description>an intuitive interface to filter, extract, and convert Genomic Data Commons experiments</description>
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12
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4 <requirements>
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5 <requirement type="package" version="2.7.10">python</requirement>
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6 </requirements>
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7 <stdio>
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8 <exit_code range="1:" />
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9 <exit_code range=":-1" />
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10 </stdio>
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10
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11 <command>
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12 <![CDATA[
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12
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13 mkdir -p tmp &&
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14 python ${__tool_directory__}/json_data_source_mod.py "${__app__.config.output_size_limit}" --json_param_file "${output1}" --path "." --appdata "tmp"
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10
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15 ]]>
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16 </command>
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24
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17 <inputs check_values="False" action="http://bioinf.iasi.cnr.it/gdcwebapp/app.php">
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18 <display>Go to GDCWebApp service $GALAXY_URL</display>
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26
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19 <param name="GALAXY_URL" type="baseurl" value="/async/data_source_gdcwebapp" />
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20 </inputs>
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21 <outputs>
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10
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22 <collection name="list_output" type="list:list" label="${tool.name} Output Collection">
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16
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23 <discover_datasets pattern="(?P<identifier_0>[^_]+)_(?P<identifier_1>[^_]+)_(?P<ext>[^_]+)_(?P<dbkey>[^_]+)" ext="auto" visible="False" directory="tmp" />
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6
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24 </collection>
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28
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25 <data name="output1" format="auto" label="${tool.name} Output Data" />
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0
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26 </outputs>
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27 <options sanitize="False" refresh="True" />
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28 </tool>
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