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comparison gdcwebapp.xml @ 46:33e5c1b7b9af draft

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author fabio
date Thu, 22 Jun 2017 22:27:55 -0400
parents bab44ade984c
children 7d3117898196
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45:b0d8d9cdf942 46:33e5c1b7b9af
3 <description>an intuitive interface to filter, extract, and convert Genomic Data Commons experiments</description> 3 <description>an intuitive interface to filter, extract, and convert Genomic Data Commons experiments</description>
4 <requirements> 4 <requirements>
5 <requirement type="package" version="2.7.10">python</requirement> 5 <requirement type="package" version="2.7.10">python</requirement>
6 <requirement type="package" version="1.0.0">json_collect_data_source</requirement> 6 <requirement type="package" version="1.0.0">json_collect_data_source</requirement>
7 </requirements> 7 </requirements>
8 <stdio> 8 <command detect_errors="exit_code">json_collect_data_source.py '${__app__.config.output_size_limit}' --json_param_file '${output1}' --path '.' --appdata 'tmp'</command>
9 <exit_code range="1:" />
10 <exit_code range=":-1" />
11 </stdio>
12 <command>
13 <![CDATA[
14 python '$__tool_directory__/jcds_wrapper.py' '${__app__.config.output_size_limit}' --json_param_file '${output1}' --path '.' --appdata 'tmp'
15 ]]>
16 </command>
17 <inputs check_values="False" action="http://bioinf.iasi.cnr.it/gdcwebapp/app.php"> 9 <inputs check_values="False" action="http://bioinf.iasi.cnr.it/gdcwebapp/app.php">
18 <display>Go to GDCWebApp service $GALAXY_URL</display> 10 <display>Go to GDCWebApp service $GALAXY_URL</display>
19 <param name="GALAXY_URL" type="baseurl" value="/async/data_source_gdcwebapp" /> 11 <param name="GALAXY_URL" type="baseurl" value="/async/data_source_gdcwebapp" />
20 </inputs> 12 </inputs>
21 <outputs> 13 <outputs>