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comparison gdcwebapp.xml @ 36:94fb18e41385 draft

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Uploaded 20170614
author fabio
date Wed, 14 Jun 2017 16:20:06 -0400
parents 1edc869cd008
children 423b844d302e
comparison
equal deleted inserted replaced
35:5c10dbaa9cc5 36:94fb18e41385
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool name="GDCWebApp" id="data_source_gdcwebapp" tool_type="data_source_async" hidden="False" display_interface="False" version="1.0.0" force_history_refresh="True"> 2 <tool name="GDCWebApp" id="data_source_gdcwebapp" tool_type="data_source_async" hidden="False" display_interface="False" version="1.0.0" force_history_refresh="True">
3 <description>an intuitive interface to filter, extract, and convert Genomic Data Commons experiments</description> 3 <description>an intuitive interface to filter, extract, and convert Genomic Data Commons experiments</description>
4 <requirements> 4 <requirements>
5 <requirement type="package" version="2.7.10">python</requirement> 5 <requirement type="package" version="2.7.10">python</requirement>
6 <requirement type="package" version="1.0.0">galaxy_json_collect_data_source</requirement>
6 </requirements> 7 </requirements>
7 <stdio> 8 <stdio>
8 <exit_code range="1:" /> 9 <exit_code range="1:" />
9 <exit_code range=":-1" /> 10 <exit_code range=":-1" />
10 </stdio> 11 </stdio>
11 <command> 12 <command>
12 <![CDATA[ 13 <![CDATA[
13 mkdir -p tmp && 14 mkdir -p tmp &&
14 python ${__tool_directory__}/json_collect_data_source.py "${__app__.config.output_size_limit}" --json_param_file "${output1}" --path "." --appdata "tmp" 15 python json_collect_data_source.py '${__app__.config.output_size_limit}' --json_param_file '${output1}' --path '.' --appdata 'tmp'
15 ]]> 16 ]]>
16 </command> 17 </command>
17 <inputs check_values="False" action="http://bioinf.iasi.cnr.it/gdcwebapp/app.php"> 18 <inputs check_values="False" action="http://bioinf.iasi.cnr.it/gdcwebapp/app.php">
18 <display>Go to GDCWebApp service $GALAXY_URL</display> 19 <display>Go to GDCWebApp service $GALAXY_URL</display>
19 <param name="GALAXY_URL" type="baseurl" value="/async/data_source_gdcwebapp" /> 20 <param name="GALAXY_URL" type="baseurl" value="/async/data_source_gdcwebapp" />