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comparison gdcwebapp.xml @ 10:c0be9583df97 draft

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Uploaded 20170525
author fabio
date Thu, 25 May 2017 17:58:15 -0400
parents 4bb8859f919c
children 80593f75d74a
comparison
equal deleted inserted replaced
9:61989e353d24 10:c0be9583df97
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool name="GDCWebApp" id="data_source_gdcwebapp" tool_type="data_source" hidden="False" display_interface="False" version="1.0.0" force_history_refresh="True"> 2 <tool name="GDCWebApp" id="data_source_gdcwebapp" tool_type="data_source" hidden="False" display_interface="False" version="1.0.0" force_history_refresh="True">
3 <description>an intuitive interface to filter, extract, and convert Genomic Data Commons experiments</description> 3 <description>an intuitive interface to filter, extract, and convert Genomic Data Commons experiments</description>
4 <requirements>
5 <requirement type="package" version="2.7.10">python</requirement>
6 <!--<requirement type="package" version="1.0.0">galaxy_json_data_source</requirement>-->
7 </requirements>
8 <stdio> 4 <stdio>
9 <exit_code range="1:" /> 5 <exit_code range="1:" />
10 <exit_code range=":-1" /> 6 <exit_code range=":-1" />
11 </stdio> 7 </stdio>
12 <!--<version_command>json_data_source.py --version</version_command>--> 8 <command>
13 <!--<command>json_data_source.py "${__app__.config.output_size_limit}" --json_param_file "${output1}" --path "."</command>--> 9 <![CDATA[
14 <command interpreter="python">json_data_source_mod.py "${__app__.config.output_size_limit}" --json_param_file "${output1}" --path "." --appdata "${tool.name}"</command> 10 mkdir -p ${tool.name}_tmp &&
11 python ${__tool_directory__}/json_data_source_mod.py "${__app__.config.output_size_limit}" --json_param_file "${output1}" --path "." --appdata "${tool.name}_tmp"
12 ]]>
13 </command>
15 <inputs check_values="False" action="http://bioinf.iasi.cnr.it/gdcwebapp/app.php" > 14 <inputs check_values="False" action="http://bioinf.iasi.cnr.it/gdcwebapp/app.php" >
16 <display>Go to GDCWebApp service $GALAXY_URL</display> 15 <display>Go to GDCWebApp service $GALAXY_URL</display>
17 <param name="URL" type="hidden" value="" /> 16 <param name="URL" type="hidden" value="" />
18 </inputs> 17 </inputs>
19 <outputs> 18 <outputs>
20 <data name="output1" format="auto" /> 19 <data name="output1" format="auto" visible="False" />
21 <collection name="list_output" type="list:list" label="${tool.name} output"> 20 <collection name="list_output" type="list:list" label="${tool.name} Output Collection">
22 <discover_datasets pattern="(?P&lt;archive_name&gt;.*)_(?P&lt;file_name&gt;.*)\..*" ext="auto" visible="True" directory="${tool.name}" /> 21 <discover_datasets pattern="(?P&lt;archive_name&gt;.*)_(?P&lt;file_name&gt;.*)\..*" ext="auto" visible="True" directory="${tool.name}_tmp" />
23 </collection> 22 </collection>
24 </outputs> 23 </outputs>
25 <options sanitize="False" refresh="True" /> 24 <options sanitize="False" refresh="True" />
26 </tool> 25 </tool>