Mercurial > repos > fabio > gdcwebapp
view gdcwebapp.xml @ 42:3858a4e5693f draft
Uploaded 20170622
author | fabio |
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date | Thu, 22 Jun 2017 14:19:35 -0400 |
parents | 33c90d75a74f |
children | 73d593ff91e4 |
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<?xml version="1.0"?> <tool name="GDCWebApp" id="data_source_gdcwebapp" tool_type="data_source_async" hidden="False" display_interface="False" version="1.0.0" force_history_refresh="True"> <description>an intuitive interface to filter, extract, and convert Genomic Data Commons experiments</description> <requirements> <requirement type="package" version="2.7.10">python</requirement> <requirement type="package" version="1.0.0">json-collect-data-source</requirement> </requirements> <stdio> <exit_code range="1:" /> <exit_code range=":-1" /> </stdio> <command>json_collect_data_source.py '${__app__.config.output_size_limit}' --json_param_file '${output1}' --path '.' --appdata 'tmp'</command> <inputs check_values="False" action="http://bioinf.iasi.cnr.it/gdcwebapp/app.php"> <display>Go to GDCWebApp service $GALAXY_URL</display> <param name="GALAXY_URL" type="baseurl" value="/async/data_source_gdcwebapp" /> </inputs> <outputs> <collection name="list_output" type="list:list" label="${tool.name} Output Collection"> <discover_datasets pattern="(?P<identifier_0>[^_]+)_(?P<identifier_1>[^_]+)_(?P<ext>[^_]+)_(?P<dbkey>[^_]+)" ext="auto" visible="False" directory="tmp" /> </collection> <data name="output1" format="auto" label="${tool.name} Output Data" /> </outputs> <options sanitize="False" refresh="True" /> </tool>