Mercurial > repos > fabio > gdcwebapp
view gdcwebapp.xml @ 7:43bf11d50b88 draft
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author | fabio |
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date | Thu, 25 May 2017 15:37:21 -0400 |
parents | 7815152f70c6 |
children | 4bb8859f919c |
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<?xml version="1.0"?> <tool name="GDCWebApp" id="data_source_gdcwebapp" tool_type="data_source" hidden="False" display_interface="False" version="1.0.0" force_history_refresh="True"> <description>an intuitive interface to filter, extract, and convert Genomic Data Commons experiments</description> <requirements> <requirement type="package" version="2.7.10">python</requirement> <!--<requirement type="package" version="1.0.0">galaxy_json_data_source</requirement>--> </requirements> <stdio> <exit_code range="1:" /> <exit_code range=":-1" /> </stdio> <!--<version_command>json_data_source.py --version</version_command>--> <version_command>json_data_source_mod.py --version</version_command> <!--<command>json_data_source.py "${__app__.config.output_size_limit}" --json_param_file "${output1}" --path "."</command>--> <command interpreter="python">json_data_source_mod.py "${__app__.config.output_size_limit}" --json_param_file "${output1}" --path "." --appdata "${tool.name}"</command> <inputs check_values="False" action="http://bioinf.iasi.cnr.it/gdcwebapp/app.php" > <display>Go to GDCWebApp service $GALAXY_URL</display> <param name="URL" type="hidden" value="" /> </inputs> <outputs> <data name="output1" format="auto" /> <collection name="list_output" type="list:list" label="${tool.name} output"> <discover_datasets pattern="(?P<archive_name>.*)_(?P<file_name>.*)\..*" ext="auto" visible="True" directory="${tool.name}" /> </collection> </outputs> <options sanitize="False" refresh="True" /> </tool>