Mercurial > repos > fabio > gdcwebapp
view gdcwebapp.xml @ 23:6a6797e14223 draft
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author | fabio |
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date | Tue, 06 Jun 2017 17:29:28 -0400 |
parents | 91b6d6d0b275 |
children | cbd56a0f76b7 |
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<?xml version="1.0"?> <tool name="GDCWebApp" id="data_source_gdcwebapp" tool_type="data_source_async" hidden="False" display_interface="False" version="1.0.0" force_history_refresh="True"> <description>an intuitive interface to filter, extract, and convert Genomic Data Commons experiments</description> <requirements> <requirement type="package" version="2.7.10">python</requirement> </requirements> <stdio> <exit_code range="1:" /> <exit_code range=":-1" /> </stdio> <command> <![CDATA[ mkdir -p tmp && python ${__tool_directory__}/json_data_source_mod.py "${__app__.config.output_size_limit}" --json_param_file "${output1}" --path "." --appdata "tmp" ]]> </command> <inputs check_values="False" action="http://localhost/gdcwebapp/app.php"> <display>Go to GDCWebApp service $GALAXY_URL</display> </inputs> <outputs> <data name="output1" format="auto" label="${tool.name} Output Data" /> <collection name="list_output" type="list:list" label="${tool.name} Output Collection"> <discover_datasets pattern="(?P<identifier_0>[^_]+)_(?P<identifier_1>[^_]+)_(?P<ext>[^_]+)_(?P<dbkey>[^_]+)" ext="auto" visible="False" directory="tmp" /> </collection> </outputs> <options sanitize="False" refresh="True" /> </tool>