# HG changeset patch
# User fabio
# Date 1496440176 14400
# Node ID 8c0633c02758a4a5c10a9e4e308e220225c1cc21
# Parent  5244d3a1a44174398803efe58b1cf311485c7c78
Uploaded 20170602

diff -r 5244d3a1a441 -r 8c0633c02758 ._gdcwebapp.xml
Binary file ._gdcwebapp.xml has changed
diff -r 5244d3a1a441 -r 8c0633c02758 ._json_data_source_mod.py
Binary file ._json_data_source_mod.py has changed
diff -r 5244d3a1a441 -r 8c0633c02758 gdcwebapp.xml
--- a/gdcwebapp.xml	Thu Jun 01 17:45:04 2017 -0400
+++ b/gdcwebapp.xml	Fri Jun 02 17:49:36 2017 -0400
@@ -14,11 +14,11 @@
             python ${__tool_directory__}/json_data_source_mod.py "${__app__.config.output_size_limit}" --json_param_file "${output1}" --path "." --appdata "tmp"
         ]]>
     </command>
-    <inputs check_values="False" action="http://bioinf.iasi.cnr.it/gdcwebapp/app.php" >
+    <inputs check_values="False" action="http://bioinf.iasi.cnr.it/gdcwebapp/app.php">
         <display>Go to GDCWebApp service $GALAXY_URL</display>
     </inputs>
     <outputs>
-        <data name="output1" format="auto" label="${tool.name} Output Data" hidden="True" />
+        <data name="output1" format="auto" label="${tool.name} Output Data" />
         <collection name="list_output" type="list:list" label="${tool.name} Output Collection">
             <discover_datasets pattern="(?P&lt;identifier_0&gt;[^_]+)_(?P&lt;identifier_1&gt;[^_]+)_(?P&lt;ext&gt;[^_]+)_(?P&lt;dbkey&gt;[^_]+)" ext="auto" visible="False" directory="tmp" />
         </collection>
diff -r 5244d3a1a441 -r 8c0633c02758 json_data_source_mod.py
--- a/json_data_source_mod.py	Thu Jun 01 17:45:04 2017 -0400
+++ b/json_data_source_mod.py	Fri Jun 02 17:49:36 2017 -0400
@@ -226,8 +226,8 @@
     # TODO: make sure response is not enormous
     query_params = json.loads(urllib.urlopen( dataset_url ).read())
     # download and write files
-    #primary = False
-    primary = True
+    primary = False
+    #primary = True
     # query_item, hda_id, output_base_path, dataset_id
     for query_item in query_params:
         if isinstance( query_item, list ):