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comparison plotwithscale.xml @ 74:2bb6b44093ba draft

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Uploaded 20170619
author fabio
date Mon, 19 Jun 2017 12:08:59 -0400
parents a3bfaf944f73
children 7dcc25a1a062
comparison
equal deleted inserted replaced
73:156b29da2f0b 74:2bb6b44093ba
2 <description>on Test Scale</description> 2 <description>on Test Scale</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements" /> 6 <expand macro="requirements" />
7 <stdio> 7
8 <exit_code range="-1" level="fatal" description="Missing IWTomics package. Please be sure to have it installed before using this tool." /> 8 <command detect_errors="exit_code">
9 <exit_code range="10" level="fatal" description="Wrong test ids." />
10 <exit_code range="20" level="fatal" description="Wrong feature ids." />
11 <exit_code range="30" level="fatal" description="Two scale thresholds selected for the same test and feature." />
12 <exit_code range="40" level="fatal" description="Scale threshold too high." />
13 <exit_code range="50" level="fatal" description="Group by 'test' but selected features with different resolution." />
14 <exit_code range="60" level="fatal" description="Summary plot error. Please try again." />
15 <regex match="Error" source="both" level="fatal" description="An error has occurred. Please try again." />
16 </stdio>
17
18 <command>
19 <![CDATA[ 9 <![CDATA[
20 Rscript '$__tool_directory__/plotwithscale.R' adjustedpvalue='${adjustedpvalue}' iwtomicsrespdf='${iwtomicsrespdf}' iwtomicssumpdf='${iwtomicssumpdf}' 10 Rscript '$__tool_directory__/plotwithscale.R' adjustedpvalue='${adjustedpvalue}' iwtomicsrespdf='${iwtomicsrespdf}' iwtomicssumpdf='${iwtomicssumpdf}'
21 iwtomicsrdata='${rdata}' 11 iwtomicsrdata='${rdata}'
22 iwtomicstests='${testids}' 12 iwtomicstests='${testids}'
23 iwtomicsselectedfeatures='${featureids}' 13 iwtomicsselectedfeatures='${featureids}'