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comparison testandplot.xml @ 74:2bb6b44093ba draft

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Uploaded 20170619
author fabio
date Mon, 19 Jun 2017 12:08:59 -0400
parents a3bfaf944f73
children 7dcc25a1a062
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73:156b29da2f0b 74:2bb6b44093ba
2 <description>and Plot</description> 2 <description>and Plot</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements" /> 6 <expand macro="requirements" />
7 <stdio> 7
8 <exit_code range="-1" level="fatal" description="Missing IWTomics package. Please be sure to have it installed before using this tool." /> 8 <command detect_errors="exit_code">
9 <exit_code range="10" level="fatal" description="Wrong region ids." />
10 <exit_code range="20" level="fatal" description="Wrong feature ids." />
11 <exit_code range="30" level="fatal" description="Same test repeated multiple times." />
12 <exit_code range="40" level="fatal" description="Testing error." />
13 <regex match="Error" source="both" level="fatal" description="An error has occurred. Please try again." />
14 </stdio>
15
16 <command>
17 <![CDATA[ 9 <![CDATA[
18 Rscript '$__tool_directory__/testandplot.R' adjustedpvaluematrix='${adjustedpvaluematrix}' iwtomicsrespdf='${iwtomicsrespdf}' iwtomicssumpdf='${iwtomicssumpdf}' iwtomicsrdata='${iwtomicsrdata}' iwtomicstests='${iwtomicstests}' iwtomicsselectedfeatures='${iwtomicsselectedfeatures}' 10 Rscript '$__tool_directory__/testandplot.R' adjustedpvaluematrix='${adjustedpvaluematrix}' iwtomicsrespdf='${iwtomicsrespdf}' iwtomicssumpdf='${iwtomicssumpdf}' iwtomicsrdata='${iwtomicsrdata}' iwtomicstests='${iwtomicstests}' iwtomicsselectedfeatures='${iwtomicsselectedfeatures}'
19 regionids='${regionids}' 11 regionids='${regionids}'
20 featureids='${featureids}' 12 featureids='${featureids}'
21 rdatafile='${rdata}' 13 rdatafile='${rdata}'