Mercurial > repos > fabio > iwtomics
comparison testandplot.xml @ 74:2bb6b44093ba draft
Uploaded 20170619
author | fabio |
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date | Mon, 19 Jun 2017 12:08:59 -0400 |
parents | a3bfaf944f73 |
children | 7dcc25a1a062 |
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73:156b29da2f0b | 74:2bb6b44093ba |
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2 <description>and Plot</description> | 2 <description>and Plot</description> |
3 <macros> | 3 <macros> |
4 <import>macros.xml</import> | 4 <import>macros.xml</import> |
5 </macros> | 5 </macros> |
6 <expand macro="requirements" /> | 6 <expand macro="requirements" /> |
7 <stdio> | 7 |
8 <exit_code range="-1" level="fatal" description="Missing IWTomics package. Please be sure to have it installed before using this tool." /> | 8 <command detect_errors="exit_code"> |
9 <exit_code range="10" level="fatal" description="Wrong region ids." /> | |
10 <exit_code range="20" level="fatal" description="Wrong feature ids." /> | |
11 <exit_code range="30" level="fatal" description="Same test repeated multiple times." /> | |
12 <exit_code range="40" level="fatal" description="Testing error." /> | |
13 <regex match="Error" source="both" level="fatal" description="An error has occurred. Please try again." /> | |
14 </stdio> | |
15 | |
16 <command> | |
17 <![CDATA[ | 9 <![CDATA[ |
18 Rscript '$__tool_directory__/testandplot.R' adjustedpvaluematrix='${adjustedpvaluematrix}' iwtomicsrespdf='${iwtomicsrespdf}' iwtomicssumpdf='${iwtomicssumpdf}' iwtomicsrdata='${iwtomicsrdata}' iwtomicstests='${iwtomicstests}' iwtomicsselectedfeatures='${iwtomicsselectedfeatures}' | 10 Rscript '$__tool_directory__/testandplot.R' adjustedpvaluematrix='${adjustedpvaluematrix}' iwtomicsrespdf='${iwtomicsrespdf}' iwtomicssumpdf='${iwtomicssumpdf}' iwtomicsrdata='${iwtomicsrdata}' iwtomicstests='${iwtomicstests}' iwtomicsselectedfeatures='${iwtomicsselectedfeatures}' |
19 regionids='${regionids}' | 11 regionids='${regionids}' |
20 featureids='${featureids}' | 12 featureids='${featureids}' |
21 rdatafile='${rdata}' | 13 rdatafile='${rdata}' |