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comparison loadandplot.xml @ 34:7e5e94fe6b1f draft

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Uploaded 20170531
author fabio
date Wed, 31 May 2017 12:42:49 -0400
parents 565118df598a
children 2920f5342d4d
comparison
equal deleted inserted replaced
33:40542bd944eb 34:7e5e94fe6b1f
86 #else: 86 #else:
87 probs="c(${plotres.conditionalplottype.probabilitiessection.prob0},${plotres.conditionalplottype.probabilitiessection.prob1},${plotres.conditionalplottype.probabilitiessection.prob2})" 87 probs="c(${plotres.conditionalplottype.probabilitiessection.prob0},${plotres.conditionalplottype.probabilitiessection.prob1},${plotres.conditionalplottype.probabilitiessection.prob2})"
88 #end if 88 #end if
89 #end if 89 #end if
90 90
91 >& /dev/null 91 2> "${stackerr}"
92 ]]> 92 ]]>
93 <!-- 93 <!--
94 to print the stack add the following line at the end of the command and enable the corresponding entry in output 94 to print the stack add the following line at the end of the command and enable the corresponding entry in output
95 2> "${stackerr}" 95 2> "${stackerr}"
96 >& /dev/null
96 --> 97 -->
97 </command> 98 </command>
98 99
99 <inputs> 100 <inputs>
100 <!-- regions --> 101 <!-- regions -->
223 </conditional> 224 </conditional>
224 </section> 225 </section>
225 </inputs> 226 </inputs>
226 227
227 <outputs> 228 <outputs>
228 <!--<data format="txt" name="stackerr" label="iwtomics.loadandplot.stackerr.txt" from_work_dir="iwtomics.loadandplot.stackerr.txt" />--> 229 <data format="txt" name="stackerr" label="iwtomics.loadandplot.stackerr.txt" from_work_dir="iwtomics.loadandplot.stackerr.txt" />
229 <data format="rdata" name="outrdata" label="${tool.name} on ${on_string}: IWTomicsData Object" from_work_dir="iwtomics.loadandplot.RData" /> 230 <data format="rdata" name="outrdata" label="${tool.name} on ${on_string}: IWTomicsData Object" from_work_dir="iwtomics.loadandplot.RData" />
230 <data format="tabular" name="outregions" label="${tool.name} on ${on_string}: Region Dataset IDs" from_work_dir="iwtomics.loadandplot.regions.txt" /> 231 <data format="tabular" name="outregions" label="${tool.name} on ${on_string}: Region Dataset IDs" from_work_dir="iwtomics.loadandplot.regions.txt" />
231 <data format="tabular" name="outfeatures" label="${tool.name} on ${on_string}: Feature IDs" from_work_dir="iwtomics.loadandplot.features.txt" /> 232 <data format="tabular" name="outfeatures" label="${tool.name} on ${on_string}: Feature IDs" from_work_dir="iwtomics.loadandplot.features.txt" />
232 <data format="pdf" name="outpdf" label="${tool.name} on ${on_string}: Plotted Data" from_work_dir="iwtomics.loadandplot.pdf" /> 233 <data format="pdf" name="outpdf" label="${tool.name} on ${on_string}: Plotted Data" from_work_dir="iwtomics.loadandplot.pdf" />
233 </outputs> 234 </outputs>