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comparison plotwithscale.xml @ 68:971bb414cc4f draft

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Uploaded 20170609
author fabio
date Fri, 09 Jun 2017 12:26:43 -0400
parents 0b07bbe59b14
children 39e7294c66e1
comparison
equal deleted inserted replaced
67:05b7f688c247 68:971bb414cc4f
58 2> "${stackerr}" 58 2> "${stackerr}"
59 --> 59 -->
60 </command> 60 </command>
61 61
62 <inputs> 62 <inputs>
63 <help>
64 ...
65 </help>
66
67 <!-- RData --> 63 <!-- RData -->
68 <param format="rdata" name="rdata" type="data" label="Select IWTomicsData object with test results" help="File created by 'IWTomics Test and Plot'." /> 64 <param format="rdata" name="rdata" type="data" label="Select IWTomicsData object with test results" help="File created by 'IWTomics Test and Plot'." />
69 <!-- test IDs --> 65 <!-- test IDs -->
70 <param format="tabular" name="testids" type="data" label="Select test IDs" help="File created by 'IWTomics Test and Plot'." /> 66 <param format="tabular" name="testids" type="data" label="Select test IDs" help="File created by 'IWTomics Test and Plot'." />
71 <!-- feature IDs --> 67 <!-- feature IDs -->
167 <output name="iwtomicsrespdf" file="output_plotwithscale/iwtomics.plotwithscale.iwtomicstestresults.pdf" compare="sim_size" /> 163 <output name="iwtomicsrespdf" file="output_plotwithscale/iwtomics.plotwithscale.iwtomicstestresults.pdf" compare="sim_size" />
168 <output name="iwtomicssumpdf" file="output_plotwithscale/iwtomics.plotwithscale.summaryplot.pdf" compare="sim_size" /> 164 <output name="iwtomicssumpdf" file="output_plotwithscale/iwtomics.plotwithscale.summaryplot.pdf" compare="sim_size" />
169 </test> 165 </test>
170 </tests> 166 </tests>
171 167
172 <help> 168 <help><![CDATA[
173 This tool allows to select the scale for the Interval-Wise Testing results. In particular, it returns the p-value curves 169 This tool allows to select the scale for the Interval-Wise Testing results. In particular, it returns the p-value curves
174 for the different tests performed at the selected scale, and it creates a graphical representation of the 170 for the different tests performed at the selected scale, and it creates a graphical representation of the
175 Interval-Wise Testing results and a summary plot (optional) at the selected scale. 171 Interval-Wise Testing results and a summary plot (optional) at the selected scale.
176 172
177 ----- 173 -----
201 197
202 It implements a simplified version of the function *IWTomicsTest*, *plotTest* and *plotSummary* for *IWTomicsData* objects. 198 It implements a simplified version of the function *IWTomicsTest*, *plotTest* and *plotSummary* for *IWTomicsData* objects.
203 The complete version can be found in the *R/Bioconductor* package *IWTomics* (see vignette_). 199 The complete version can be found in the *R/Bioconductor* package *IWTomics* (see vignette_).
204 200
205 .. _vignette: https://bioconductor.org/packages/release/bioc/vignettes/IWTomics/inst/doc/IWTomics.pdf 201 .. _vignette: https://bioconductor.org/packages/release/bioc/vignettes/IWTomics/inst/doc/IWTomics.pdf
206 </help> 202 ]]></help>
207 203
208 <citations> 204 <citations>
209 <citation type="bibtex"> 205 <citation type="bibtex">
210 @ARTICLE{ 206 @ARTICLE{
211 iwt-functional-data, 207 iwt-functional-data,