Mercurial > repos > fabio > iwtomics
comparison plotwithscale.xml @ 68:971bb414cc4f draft
Uploaded 20170609
author | fabio |
---|---|
date | Fri, 09 Jun 2017 12:26:43 -0400 |
parents | 0b07bbe59b14 |
children | 39e7294c66e1 |
comparison
equal
deleted
inserted
replaced
67:05b7f688c247 | 68:971bb414cc4f |
---|---|
58 2> "${stackerr}" | 58 2> "${stackerr}" |
59 --> | 59 --> |
60 </command> | 60 </command> |
61 | 61 |
62 <inputs> | 62 <inputs> |
63 <help> | |
64 ... | |
65 </help> | |
66 | |
67 <!-- RData --> | 63 <!-- RData --> |
68 <param format="rdata" name="rdata" type="data" label="Select IWTomicsData object with test results" help="File created by 'IWTomics Test and Plot'." /> | 64 <param format="rdata" name="rdata" type="data" label="Select IWTomicsData object with test results" help="File created by 'IWTomics Test and Plot'." /> |
69 <!-- test IDs --> | 65 <!-- test IDs --> |
70 <param format="tabular" name="testids" type="data" label="Select test IDs" help="File created by 'IWTomics Test and Plot'." /> | 66 <param format="tabular" name="testids" type="data" label="Select test IDs" help="File created by 'IWTomics Test and Plot'." /> |
71 <!-- feature IDs --> | 67 <!-- feature IDs --> |
167 <output name="iwtomicsrespdf" file="output_plotwithscale/iwtomics.plotwithscale.iwtomicstestresults.pdf" compare="sim_size" /> | 163 <output name="iwtomicsrespdf" file="output_plotwithscale/iwtomics.plotwithscale.iwtomicstestresults.pdf" compare="sim_size" /> |
168 <output name="iwtomicssumpdf" file="output_plotwithscale/iwtomics.plotwithscale.summaryplot.pdf" compare="sim_size" /> | 164 <output name="iwtomicssumpdf" file="output_plotwithscale/iwtomics.plotwithscale.summaryplot.pdf" compare="sim_size" /> |
169 </test> | 165 </test> |
170 </tests> | 166 </tests> |
171 | 167 |
172 <help> | 168 <help><![CDATA[ |
173 This tool allows to select the scale for the Interval-Wise Testing results. In particular, it returns the p-value curves | 169 This tool allows to select the scale for the Interval-Wise Testing results. In particular, it returns the p-value curves |
174 for the different tests performed at the selected scale, and it creates a graphical representation of the | 170 for the different tests performed at the selected scale, and it creates a graphical representation of the |
175 Interval-Wise Testing results and a summary plot (optional) at the selected scale. | 171 Interval-Wise Testing results and a summary plot (optional) at the selected scale. |
176 | 172 |
177 ----- | 173 ----- |
201 | 197 |
202 It implements a simplified version of the function *IWTomicsTest*, *plotTest* and *plotSummary* for *IWTomicsData* objects. | 198 It implements a simplified version of the function *IWTomicsTest*, *plotTest* and *plotSummary* for *IWTomicsData* objects. |
203 The complete version can be found in the *R/Bioconductor* package *IWTomics* (see vignette_). | 199 The complete version can be found in the *R/Bioconductor* package *IWTomics* (see vignette_). |
204 | 200 |
205 .. _vignette: https://bioconductor.org/packages/release/bioc/vignettes/IWTomics/inst/doc/IWTomics.pdf | 201 .. _vignette: https://bioconductor.org/packages/release/bioc/vignettes/IWTomics/inst/doc/IWTomics.pdf |
206 </help> | 202 ]]></help> |
207 | 203 |
208 <citations> | 204 <citations> |
209 <citation type="bibtex"> | 205 <citation type="bibtex"> |
210 @ARTICLE{ | 206 @ARTICLE{ |
211 iwt-functional-data, | 207 iwt-functional-data, |