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comparison testandplot.xml @ 68:971bb414cc4f draft

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Uploaded 20170609
author fabio
date Fri, 09 Jun 2017 12:26:43 -0400
parents 0b07bbe59b14
children 39e7294c66e1
comparison
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67:05b7f688c247 68:971bb414cc4f
204 <output name="iwtomicstests" file="output_testandplot/iwtomics.testandplot.tests.txt" /> 204 <output name="iwtomicstests" file="output_testandplot/iwtomics.testandplot.tests.txt" />
205 <output name="iwtomicsselectedfeatures" file="output_testandplot/iwtomics.testandplot.selectedfeatures.txt" /> 205 <output name="iwtomicsselectedfeatures" file="output_testandplot/iwtomics.testandplot.selectedfeatures.txt" />
206 </test> 206 </test>
207 </tests> 207 </tests>
208 208
209 <help> 209 <help><![CDATA[
210 This tool statistically evaluates differences in genomic features between groups of regions along the genome. 210 This tool statistically evaluates differences in genomic features between groups of regions along the genome.
211 In particular, it implements the Interval-Wise Testing for omics data, an extended version of the Interval-Wise 211 In particular, it implements the Interval-Wise Testing for omics data, an extended version of the Interval-Wise
212 Testing for functional data presented in Pini and Vantini (2017). It allows to perform multiple two sample permutation 212 Testing for functional data presented in Pini and Vantini (2017). It allows to perform multiple two sample permutation
213 tests between pairs of region datasets, on several features. It returns the adjusted p-value curves for every test 213 tests between pairs of region datasets, on several features. It returns the adjusted p-value curves for every test
214 and all possible scales. Moreover, it creates a graphical representation of the Interval-Wise Testing results 214 and all possible scales. Moreover, it creates a graphical representation of the Interval-Wise Testing results
247 247
248 It implements a simplified version of the function *IWTomicsTest*, *plotTest* and *plotSummary* for *IWTomicsData* objects. 248 It implements a simplified version of the function *IWTomicsTest*, *plotTest* and *plotSummary* for *IWTomicsData* objects.
249 The complete version can be found in the *R/Bioconductor* package *IWTomics* (see vignette_). 249 The complete version can be found in the *R/Bioconductor* package *IWTomics* (see vignette_).
250 250
251 .. _vignette: https://bioconductor.org/packages/release/bioc/vignettes/IWTomics/inst/doc/IWTomics.pdf 251 .. _vignette: https://bioconductor.org/packages/release/bioc/vignettes/IWTomics/inst/doc/IWTomics.pdf
252 </help> 252 ]]></help>
253 253
254 <citations> 254 <citations>
255 <citation type="bibtex"> 255 <citation type="bibtex">
256 @ARTICLE{ 256 @ARTICLE{
257 iwt-functional-data, 257 iwt-functional-data,