Mercurial > repos > fabio > iwtomics
comparison loadandplot.xml @ 64:bd5ba4648ac0 draft
Uploaded 20170608
author | fabio |
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date | Thu, 08 Jun 2017 17:39:47 -0400 |
parents | 7a806a3aeda1 |
children | 0b07bbe59b14 |
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63:c3eb6f46884b | 64:bd5ba4648ac0 |
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3 <macros> | 3 <macros> |
4 <import>macros.xml</import> | 4 <import>macros.xml</import> |
5 </macros> | 5 </macros> |
6 <expand macro="requirements" /> | 6 <expand macro="requirements" /> |
7 <stdio> | 7 <stdio> |
8 <exit_code range="255" source="both" level="fatal" description="Missing IWTomics package. Please be sure to have it installed before using this tool." /> | 8 <exit_code range="255" level="fatal" description="Missing IWTomics package. Please be sure to have it installed before using this tool." /> |
9 <exit_code range="10" source="both" level="fatal" description="An error has occurred reading the header file for regions. Please try again." /> | 9 <exit_code range="10" level="fatal" description="An error has occurred reading the header file for regions. Please try again." /> |
10 <exit_code range="11" source="both" level="fatal" description="Not all region files are present in the first column of header file for regions." /> | 10 <exit_code range="11" level="fatal" description="Not all region files are present in the first column of header file for regions." /> |
11 <exit_code range="20" source="both" level="fatal" description="An error has occurred reading the header file for features. Please try again." /> | 11 <exit_code range="20" level="fatal" description="An error has occurred reading the header file for features. Please try again." /> |
12 <exit_code range="21" source="both" level="fatal" description="Not all feature files are present in the first column of header file for features." /> | 12 <exit_code range="21" level="fatal" description="Not all feature files are present in the first column of header file for features." /> |
13 <exit_code range="30" source="both" level="fatal" description="An error has occurred reading the data. Please try again." /> | 13 <exit_code range="30" level="fatal" description="An error has occurred reading the data. Please try again." /> |
14 <exit_code range="31" source="both" level="fatal" description="Not enough columns in input file." /> | 14 <exit_code range="31" level="fatal" description="Not enough columns in input file." /> |
15 <exit_code range="32" source="both" level="fatal" description="Duplicated regions in region file." /> | 15 <exit_code range="32" level="fatal" description="Duplicated regions in region file." /> |
16 <exit_code range="33" source="both" level="fatal" description="Duplicated windows in feature file." /> | 16 <exit_code range="33" level="fatal" description="Duplicated windows in feature file." /> |
17 <exit_code range="34" source="both" level="fatal" description="Overlapping windows in feature file." /> | 17 <exit_code range="34" level="fatal" description="Overlapping windows in feature file." /> |
18 <exit_code range="35" source="both" level="fatal" description="Windows in feature files do not cover all regions in region files." /> | 18 <exit_code range="35" level="fatal" description="Windows in feature files do not cover all regions in region files." /> |
19 <exit_code range="36" source="both" level="fatal" description="All windows in a feature file must have the same size." /> | 19 <exit_code range="36" level="fatal" description="All windows in a feature file must have the same size." /> |
20 <exit_code range="40" source="both" level="fatal" description="An error has occurred smoothing the data. Please try again." /> | 20 <exit_code range="40" level="fatal" description="An error has occurred smoothing the data. Please try again." /> |
21 <regex match="Error" source="both" level="fatal" description="An error has occurred. Please try again." /> | 21 <regex match="Error" level="fatal" description="An error has occurred. Please try again." /> |
22 </stdio> | 22 </stdio> |
23 | 23 |
24 <command> | 24 <command> |
25 <![CDATA[ | 25 <![CDATA[ |
26 Rscript $__tool_directory__/loadandplot.R outrdata="${outrdata}" outregions="${outregions}" outfeatures="${outfeatures}" outpdf="${outpdf}" | 26 Rscript $__tool_directory__/loadandplot.R outrdata="${outrdata}" outregions="${outregions}" outfeatures="${outfeatures}" outpdf="${outpdf}" |