Mercurial > repos > fabio > iwtomics

comparison plotwithscale.xml @ 64:bd5ba4648ac0 draft

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Uploaded 20170608
author fabio
date Thu, 08 Jun 2017 17:39:47 -0400
parents 7a806a3aeda1
children 0b07bbe59b14
comparison
equal deleted inserted replaced
63:c3eb6f46884b 64:bd5ba4648ac0
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements" /> 6 <expand macro="requirements" />
7 <stdio> 7 <stdio>
8 <exit_code range="-1" source="both" level="fatal" description="Missing IWTomics package. Please be sure to have it installed before using this tool." /> 8 <exit_code range="-1" level="fatal" description="Missing IWTomics package. Please be sure to have it installed before using this tool." />
9 <exit_code range="10" source="both" level="fatal" description="Wrong test ids." /> 9 <exit_code range="10" level="fatal" description="Wrong test ids." />
10 <exit_code range="20" source="both" level="fatal" description="Wrong feature ids." /> 10 <exit_code range="20" level="fatal" description="Wrong feature ids." />
11 <exit_code range="30" source="both" level="fatal" description="Two scale thresholds selected for the same test and feature." /> 11 <exit_code range="30" level="fatal" description="Two scale thresholds selected for the same test and feature." />
12 <exit_code range="40" source="both" level="fatal" description="Scale threshold too high." /> 12 <exit_code range="40" level="fatal" description="Scale threshold too high." />
13 <exit_code range="50" source="both" level="fatal" description="Group by 'test' but selected features with different resolution." /> 13 <exit_code range="50" level="fatal" description="Group by 'test' but selected features with different resolution." />
14 <exit_code range="60" source="both" level="fatal" description="Summary plot error. Please try again." /> 14 <exit_code range="60" level="fatal" description="Summary plot error. Please try again." />
15 <regex match="Error" source="both" level="fatal" description="An error has occurred. Please try again." /> 15 <regex match="Error" level="fatal" description="An error has occurred. Please try again." />
16 </stdio> 16 </stdio>
17 17
18 <command> 18 <command>
19 <![CDATA[ 19 <![CDATA[
20 Rscript $__tool_directory__/plotwithscale.R adjustedpvalue="${adjustedpvalue}" iwtomicsrespdf="${iwtomicsrespdf}" iwtomicssumpdf="${iwtomicssumpdf}" 20 Rscript $__tool_directory__/plotwithscale.R adjustedpvalue="${adjustedpvalue}" iwtomicsrespdf="${iwtomicsrespdf}" iwtomicssumpdf="${iwtomicssumpdf}"