Mercurial > repos > fabio > iwtomics

comparison testandplot.xml @ 64:bd5ba4648ac0 draft

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Uploaded 20170608
author fabio
date Thu, 08 Jun 2017 17:39:47 -0400
parents 7a806a3aeda1
children 0b07bbe59b14
comparison
equal deleted inserted replaced
63:c3eb6f46884b 64:bd5ba4648ac0
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements" /> 6 <expand macro="requirements" />
7 <stdio> 7 <stdio>
8 <exit_code range="-1" source="both" level="fatal" description="Missing IWTomics package. Please be sure to have it installed before using this tool." /> 8 <exit_code range="-1" level="fatal" description="Missing IWTomics package. Please be sure to have it installed before using this tool." />
9 <exit_code range="10" source="both" level="fatal" description="Wrong region ids." /> 9 <exit_code range="10" level="fatal" description="Wrong region ids." />
10 <exit_code range="20" source="both" level="fatal" description="Wrong feature ids." /> 10 <exit_code range="20" level="fatal" description="Wrong feature ids." />
11 <exit_code range="30" source="both" level="fatal" description="Same test repeated multiple times." /> 11 <exit_code range="30" level="fatal" description="Same test repeated multiple times." />
12 <exit_code range="40" source="both" level="fatal" description="Testing error." /> 12 <exit_code range="40" level="fatal" description="Testing error." />
13 <regex match="Error" source="both" level="fatal" description="An error has occurred. Please try again." /> 13 <regex match="Error" level="fatal" description="An error has occurred. Please try again." />
14 </stdio> 14 </stdio>
15 15
16 <command> 16 <command>
17 <![CDATA[ 17 <![CDATA[
18 Rscript $__tool_directory__/testandplot.R adjustedpvaluematrix="${adjustedpvaluematrix}" iwtomicsrespdf="${iwtomicsrespdf}" iwtomicssumpdf="${iwtomicssumpdf}" iwtomicsrdata="${iwtomicsrdata}" iwtomicstests="${iwtomicstests}" iwtomicsselectedfeatures="${iwtomicsselectedfeatures}" 18 Rscript $__tool_directory__/testandplot.R adjustedpvaluematrix="${adjustedpvaluematrix}" iwtomicsrespdf="${iwtomicsrespdf}" iwtomicssumpdf="${iwtomicssumpdf}" iwtomicsrdata="${iwtomicsrdata}" iwtomicstests="${iwtomicstests}" iwtomicsselectedfeatures="${iwtomicsselectedfeatures}"