diff loadandplot.xml @ 56:9ceb3ffcd817 draft

Uploaded 20170608
author fabio
date Thu, 08 Jun 2017 16:44:13 -0400
parents d49031ef33d5
children 7a806a3aeda1
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--- a/loadandplot.xml	Wed May 31 16:26:29 2017 -0400
+++ b/loadandplot.xml	Thu Jun 08 16:44:13 2017 -0400
@@ -232,6 +232,30 @@
     <data format="pdf" name="outpdf" label="${tool.name} on ${on_string}: Plotted Data" from_work_dir="iwtomics.loadandplot.pdf" />
   </outputs>
 
+  <tests>
+    <test>
+      <param name="regions" value="input/Controls_regions.bed,input/Elements1_regions.bed,input/Elements2_regions.bed,input/Elements3_regions.bed" ftype="bed" />
+      <param name="regionsheader" value="input/regions.header.txt" ftype="tabular" />
+      <param name="features" value="input/Feature1.bed,input/Feature2.bed" ftype="bed" />
+      <param name="featuresheader" value="input/features.header.bed.txt" ftype="tabular" />
+      <param name="zerobased" value="TRUE" />
+      <param name="smoothing" value="kernel" />
+      <param name="alignment" value="center" />
+      <param name="kernelbandwidth" value="5" />
+      <param name="fillgaps" value="TRUE" />
+      <param name="average" value="TRUE" />
+      <param name="size" value="TRUE" />
+      <param name="plottype" value="boxplot" />
+      <param name="prob0" value="0.25" />
+      <param name="prob1" value="0.5" />
+      <param name="prob2" value="0.75" />
+      <output name="outrdata" file="output_loadandplot/iwtomics.loadandplot.RData" compare="sim_size" />
+      <output name="outregions" file="output_loadandplot/iwtomics.loadandplot.regions.txt" />
+      <output name="outfeatures" file="output_loadandplot/iwtomics.loadandplot.features.txt" />
+      <output name="outpdf" file="output_loadandplot/iwtomics.loadandplot.pdf" compare="sim_size" />
+    </test>
+  </tests>
+
   <help>
 This tool imports a collection of genomic region datasets, and associates to each region
 multiple genomic feature measurements. It allows to align the regions in multiple ways