Mercurial > repos > fabio > iwtomics
diff loadandplot.xml @ 56:9ceb3ffcd817 draft
Uploaded 20170608
author | fabio |
---|---|
date | Thu, 08 Jun 2017 16:44:13 -0400 |
parents | d49031ef33d5 |
children | 7a806a3aeda1 |
line wrap: on
line diff
--- a/loadandplot.xml Wed May 31 16:26:29 2017 -0400 +++ b/loadandplot.xml Thu Jun 08 16:44:13 2017 -0400 @@ -232,6 +232,30 @@ <data format="pdf" name="outpdf" label="${tool.name} on ${on_string}: Plotted Data" from_work_dir="iwtomics.loadandplot.pdf" /> </outputs> + <tests> + <test> + <param name="regions" value="input/Controls_regions.bed,input/Elements1_regions.bed,input/Elements2_regions.bed,input/Elements3_regions.bed" ftype="bed" /> + <param name="regionsheader" value="input/regions.header.txt" ftype="tabular" /> + <param name="features" value="input/Feature1.bed,input/Feature2.bed" ftype="bed" /> + <param name="featuresheader" value="input/features.header.bed.txt" ftype="tabular" /> + <param name="zerobased" value="TRUE" /> + <param name="smoothing" value="kernel" /> + <param name="alignment" value="center" /> + <param name="kernelbandwidth" value="5" /> + <param name="fillgaps" value="TRUE" /> + <param name="average" value="TRUE" /> + <param name="size" value="TRUE" /> + <param name="plottype" value="boxplot" /> + <param name="prob0" value="0.25" /> + <param name="prob1" value="0.5" /> + <param name="prob2" value="0.75" /> + <output name="outrdata" file="output_loadandplot/iwtomics.loadandplot.RData" compare="sim_size" /> + <output name="outregions" file="output_loadandplot/iwtomics.loadandplot.regions.txt" /> + <output name="outfeatures" file="output_loadandplot/iwtomics.loadandplot.features.txt" /> + <output name="outpdf" file="output_loadandplot/iwtomics.loadandplot.pdf" compare="sim_size" /> + </test> + </tests> + <help> This tool imports a collection of genomic region datasets, and associates to each region multiple genomic feature measurements. It allows to align the regions in multiple ways