--- a/testandplot.xml	Wed May 31 16:26:29 2017 -0400
+++ b/testandplot.xml	Thu Jun 08 16:44:13 2017 -0400
@@ -167,6 +167,45 @@
     <data format="tabular" name="iwtomicsselectedfeatures" label="${tool.name} on ${on_string}: Feature IDs" from_work_dir="iwtomics.testandplot.selectedfeatures.txt" />
   </outputs>
 
+  <tests>
+    <test>
+      <param name="rdata" value="output_loadandplot/iwtomics.loadandplot.RData" ftype="rdata" />
+      <param name="regionids" value="output_loadandplot/iwtomics.loadandplot.regions.txt" ftype="tabular" />
+      <param name="featureids" value="output_loadandplot/iwtomics.loadandplot.features.txt" ftype="tabular" />
+      <repeat name="regions">
+          <param name="region0" value="2" />
+          <param name="region1" value="1" />
+      </repeat>
+      <repeat name="regions">
+          <param name="region0" value="3" />
+          <param name="region1" value="1" />
+      </repeat>
+      <repeat name="regions">
+          <param name="region0" value="4" />
+          <param name="region1" value="1" />
+      </repeat>
+      <param name="featureslist" value="1,2" />
+      <param name="statistics" value="mean" />
+      <param name="permutations" value="1000" />
+      <param name="alpha" value="0.05" />
+      <param name="average" value="TRUE" />
+      <param name="size" value="TRUE" />
+      <param name="plottype" value="boxplot" />
+      <param name="prob0" value="0.25" />
+      <param name="prob1" value="0.5" />
+      <param name="prob2" value="0.75" />
+      <param name="groupby" value="feature" />
+      <param name="featurealphaplot" value="0.05" />
+      <param name="featureonlysig" value="TRUE" />
+      <output name="adjustedpvaluematrix" file="output_testandplot/iwtomics.testandplot.adjustedpvalue.matrix.txt" compare="sim_size" />
+      <output name="iwtomicsrespdf" file="output_testandplot/iwtomics.testandplot.iwtomicstestresults.pdf" compare="sim_size" />
+      <output name="iwtomicssumpdf" file="output_testandplot/iwtomics.testandplot.summaryplot.pdf" compare="sim_size" />
+      <output name="iwtomicsrdata" file="output_testandplot/iwtomics.testandplot.RData" compare="sim_size" />
+      <output name="iwtomicstests" file="output_testandplot/iwtomics.testandplot.tests.txt" />
+      <output name="iwtomicsselectedfeatures" file="output_testandplot/iwtomics.testandplot.selectedfeatures.txt" />
+    </test>
+  </tests>
+
   <help>
 This tool statistically evaluates differences in genomic features between groups of regions along the genome.
 In particular, it implements the Interval-Wise Testing for omics data, an extended version of the Interval-Wise