# HG changeset patch
# User fabio
# Date 1507311473 14400
# Node ID 32f8f6bcfd3a5e27b50bf6278b22df4e0b4d27cb
# Parent  f731b24c11096a67bc28cab893632952e0cbae4e
Uploaded

diff -r f731b24c1109 -r 32f8f6bcfd3a ._loadandplot.R
Binary file ._loadandplot.R has changed
diff -r f731b24c1109 -r 32f8f6bcfd3a ._plotwithscale.R
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diff -r f731b24c1109 -r 32f8f6bcfd3a ._testandplot.R
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diff -r f731b24c1109 -r 32f8f6bcfd3a loadandplot.xml
--- a/loadandplot.xml	Fri Oct 06 11:07:21 2017 -0400
+++ b/loadandplot.xml	Fri Oct 06 13:37:53 2017 -0400
@@ -15,8 +15,7 @@
       regionsgalaxyids='c(${region_galaxyids})'
       #set region_names = '|'.join( [ str( $r.name ) for $r in $regions ] )
       regionsfilenames='${region_names}'
-      #set region_header = str( $regionsheader )
-      #if $region_header != "None":
+      #if $regionsheader:
         regionsheaderfile='${region_header}'
       #end if
       
@@ -26,8 +25,7 @@
       featuresgalaxyids='c(${feature_galaxyids})'
       #set feature_names = '|'.join( [ str( $f.name ) for $f in $features ] )
       featuresfilenames='${feature_names}'
-      #set feature_header = str( $featuresheader )
-      #if $feature_header != "None":
+      #if $featuresheader:
         featuresheaderfile='${feature_header}'
       #end if
 
diff -r f731b24c1109 -r 32f8f6bcfd3a test-data/._.DS_Store
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diff -r f731b24c1109 -r 32f8f6bcfd3a test-data/input/._Controls_regions.bed
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diff -r f731b24c1109 -r 32f8f6bcfd3a test-data/input/._Elements1_regions.bed
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diff -r f731b24c1109 -r 32f8f6bcfd3a test-data/input/._Elements2_regions.bed
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diff -r f731b24c1109 -r 32f8f6bcfd3a test-data/input/._Elements3_regions.bed
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diff -r f731b24c1109 -r 32f8f6bcfd3a test-data/input/._Feature1.bed
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diff -r f731b24c1109 -r 32f8f6bcfd3a test-data/input/._Feature2.bed
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diff -r f731b24c1109 -r 32f8f6bcfd3a test-data/input/._features.header.bed.txt
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diff -r f731b24c1109 -r 32f8f6bcfd3a test-data/input/._regions.header.txt
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diff -r f731b24c1109 -r 32f8f6bcfd3a test-data/output_loadandplot/._iwtomics.loadandplot.RData
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diff -r f731b24c1109 -r 32f8f6bcfd3a test-data/output_loadandplot/._iwtomics.loadandplot.features.txt
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diff -r f731b24c1109 -r 32f8f6bcfd3a test-data/output_loadandplot/._iwtomics.loadandplot.pdf
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diff -r f731b24c1109 -r 32f8f6bcfd3a test-data/output_loadandplot/._iwtomics.loadandplot.regions.txt
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diff -r f731b24c1109 -r 32f8f6bcfd3a test-data/output_plotwithscale/._iwtomics.plotwithscale.adjustedpvalue.txt
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diff -r f731b24c1109 -r 32f8f6bcfd3a test-data/output_plotwithscale/._iwtomics.plotwithscale.iwtomicstestresults.pdf
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diff -r f731b24c1109 -r 32f8f6bcfd3a test-data/output_plotwithscale/._iwtomics.plotwithscale.summaryplot.pdf
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diff -r f731b24c1109 -r 32f8f6bcfd3a test-data/output_testandplot/._iwtomics.testandplot.RData
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diff -r f731b24c1109 -r 32f8f6bcfd3a test-data/output_testandplot/._iwtomics.testandplot.adjustedpvalue.matrix.txt
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diff -r f731b24c1109 -r 32f8f6bcfd3a test-data/output_testandplot/._iwtomics.testandplot.iwtomicstestresults.pdf
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diff -r f731b24c1109 -r 32f8f6bcfd3a test-data/output_testandplot/._iwtomics.testandplot.selectedfeatures.txt
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diff -r f731b24c1109 -r 32f8f6bcfd3a test-data/output_testandplot/._iwtomics.testandplot.summaryplot.pdf
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diff -r f731b24c1109 -r 32f8f6bcfd3a test-data/output_testandplot/._iwtomics.testandplot.tests.txt
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