# HG changeset patch
# User fabio
# Date 1507314827 14400
# Node ID 63c13d46bff822296bd6acde6df9c74963991ce5
# Parent  169a250816b4d4d54eb91dc53e8984e30e5de1cc
Uploaded 20171006

diff -r 169a250816b4 -r 63c13d46bff8 ._loadandplot.R
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diff -r 169a250816b4 -r 63c13d46bff8 ._plotwithscale.R
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diff -r 169a250816b4 -r 63c13d46bff8 ._testandplot.R
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diff -r 169a250816b4 -r 63c13d46bff8 loadandplot.xml
--- a/loadandplot.xml	Fri Oct 06 13:38:23 2017 -0400
+++ b/loadandplot.xml	Fri Oct 06 14:33:47 2017 -0400
@@ -16,7 +16,7 @@
       #set region_names = '|'.join( [ str( $r.name ) for $r in $regions ] )
       regionsfilenames='${region_names}'
       #if $regionsheader:
-        regionsheaderfile='${region_header}'
+        regionsheaderfile='${regionsheader}'
       #end if
       
       #set feature_paths = '|'.join( [ str( $f ) for $f in $features ] )
@@ -26,7 +26,7 @@
       #set feature_names = '|'.join( [ str( $f.name ) for $f in $features ] )
       featuresfilenames='${feature_names}'
       #if $featuresheader:
-        featuresheaderfile='${feature_header}'
+        featuresheaderfile='${featuresheader}'
       #end if
 
       smoothing="'${conditionaltype.smoothing}'"
diff -r 169a250816b4 -r 63c13d46bff8 test-data/._.DS_Store
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diff -r 169a250816b4 -r 63c13d46bff8 test-data/input/._Controls_regions.bed
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diff -r 169a250816b4 -r 63c13d46bff8 test-data/input/._Elements1_regions.bed
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diff -r 169a250816b4 -r 63c13d46bff8 test-data/input/._Elements2_regions.bed
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diff -r 169a250816b4 -r 63c13d46bff8 test-data/input/._Elements3_regions.bed
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diff -r 169a250816b4 -r 63c13d46bff8 test-data/input/._Feature1.bed
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diff -r 169a250816b4 -r 63c13d46bff8 test-data/input/._Feature2.bed
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diff -r 169a250816b4 -r 63c13d46bff8 test-data/input/._features.header.bed.txt
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diff -r 169a250816b4 -r 63c13d46bff8 test-data/input/._regions.header.txt
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diff -r 169a250816b4 -r 63c13d46bff8 test-data/output_loadandplot/._iwtomics.loadandplot.RData
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diff -r 169a250816b4 -r 63c13d46bff8 test-data/output_loadandplot/._iwtomics.loadandplot.features.txt
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diff -r 169a250816b4 -r 63c13d46bff8 test-data/output_loadandplot/._iwtomics.loadandplot.pdf
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diff -r 169a250816b4 -r 63c13d46bff8 test-data/output_loadandplot/._iwtomics.loadandplot.regions.txt
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diff -r 169a250816b4 -r 63c13d46bff8 test-data/output_plotwithscale/._iwtomics.plotwithscale.adjustedpvalue.txt
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diff -r 169a250816b4 -r 63c13d46bff8 test-data/output_plotwithscale/._iwtomics.plotwithscale.iwtomicstestresults.pdf
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diff -r 169a250816b4 -r 63c13d46bff8 test-data/output_plotwithscale/._iwtomics.plotwithscale.summaryplot.pdf
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diff -r 169a250816b4 -r 63c13d46bff8 test-data/output_testandplot/._iwtomics.testandplot.RData
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diff -r 169a250816b4 -r 63c13d46bff8 test-data/output_testandplot/._iwtomics.testandplot.adjustedpvalue.matrix.txt
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diff -r 169a250816b4 -r 63c13d46bff8 test-data/output_testandplot/._iwtomics.testandplot.selectedfeatures.txt
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diff -r 169a250816b4 -r 63c13d46bff8 test-data/output_testandplot/._iwtomics.testandplot.summaryplot.pdf
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diff -r 169a250816b4 -r 63c13d46bff8 test-data/output_testandplot/._iwtomics.testandplot.tests.txt
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