# HG changeset patch
# User fabio
# Date 1496248969 14400
# Node ID 7e5e94fe6b1f0855f4766f821be54dc1e7b7ffbf
# Parent  40542bd944ebc28cbe75e000a8cc5059360d807a
Uploaded 20170531

diff -r 40542bd944eb -r 7e5e94fe6b1f ._ETn_example
Binary file ._ETn_example has changed
diff -r 40542bd944eb -r 7e5e94fe6b1f ._example
Binary file ._example has changed
diff -r 40542bd944eb -r 7e5e94fe6b1f ._loadandplot.R
Binary file ._loadandplot.R has changed
diff -r 40542bd944eb -r 7e5e94fe6b1f ._plotwithscale.R
Binary file ._plotwithscale.R has changed
diff -r 40542bd944eb -r 7e5e94fe6b1f ._testandplot.R
Binary file ._testandplot.R has changed
diff -r 40542bd944eb -r 7e5e94fe6b1f ETn_example/._.DS_Store
Binary file ETn_example/._.DS_Store has changed
diff -r 40542bd944eb -r 7e5e94fe6b1f ETn_example/._Control.bed
Binary file ETn_example/._Control.bed has changed
diff -r 40542bd944eb -r 7e5e94fe6b1f ETn_example/._DESCRIPTION.txt
Binary file ETn_example/._DESCRIPTION.txt has changed
diff -r 40542bd944eb -r 7e5e94fe6b1f ETn_example/._ETn_fixed.bed
Binary file ETn_example/._ETn_fixed.bed has changed
diff -r 40542bd944eb -r 7e5e94fe6b1f ETn_example/._Recombination_hotspots.txt
Binary file ETn_example/._Recombination_hotspots.txt has changed
diff -r 40542bd944eb -r 7e5e94fe6b1f ETn_example/._features.header
Binary file ETn_example/._features.header has changed
diff -r 40542bd944eb -r 7e5e94fe6b1f ETn_example/._regions.header
Binary file ETn_example/._regions.header has changed
diff -r 40542bd944eb -r 7e5e94fe6b1f example/._.DS_Store
Binary file example/._.DS_Store has changed
diff -r 40542bd944eb -r 7e5e94fe6b1f example/._Controls_regions.bed
Binary file example/._Controls_regions.bed has changed
diff -r 40542bd944eb -r 7e5e94fe6b1f example/._DESCRIPTION.txt
Binary file example/._DESCRIPTION.txt has changed
diff -r 40542bd944eb -r 7e5e94fe6b1f example/._Elements1_regions.bed
Binary file example/._Elements1_regions.bed has changed
diff -r 40542bd944eb -r 7e5e94fe6b1f example/._Elements2_regions.bed
Binary file example/._Elements2_regions.bed has changed
diff -r 40542bd944eb -r 7e5e94fe6b1f example/._Elements3_regions.bed
Binary file example/._Elements3_regions.bed has changed
diff -r 40542bd944eb -r 7e5e94fe6b1f example/._Feature1.bed
Binary file example/._Feature1.bed has changed
diff -r 40542bd944eb -r 7e5e94fe6b1f example/._Feature2.bed
Binary file example/._Feature2.bed has changed
diff -r 40542bd944eb -r 7e5e94fe6b1f example/._features.header.bed.txt
Binary file example/._features.header.bed.txt has changed
diff -r 40542bd944eb -r 7e5e94fe6b1f example/._regions.header.txt
Binary file example/._regions.header.txt has changed
diff -r 40542bd944eb -r 7e5e94fe6b1f loadandplot.xml
--- a/loadandplot.xml	Wed May 31 12:39:59 2017 -0400
+++ b/loadandplot.xml	Wed May 31 12:42:49 2017 -0400
@@ -88,11 +88,12 @@
         #end if
       #end if
 
-      >& /dev/null
+      2> "${stackerr}"
 ]]>
     <!--
     to print the stack add the following line at the end of the command and enable the corresponding entry in output
     2> "${stackerr}"
+    >& /dev/null
     -->
   </command>
 
@@ -225,7 +226,7 @@
   </inputs>
 
   <outputs>
-    <!--<data format="txt" name="stackerr" label="iwtomics.loadandplot.stackerr.txt" from_work_dir="iwtomics.loadandplot.stackerr.txt" />-->
+    <data format="txt" name="stackerr" label="iwtomics.loadandplot.stackerr.txt" from_work_dir="iwtomics.loadandplot.stackerr.txt" />
     <data format="rdata" name="outrdata" label="${tool.name} on ${on_string}: IWTomicsData Object" from_work_dir="iwtomics.loadandplot.RData" />
     <data format="tabular" name="outregions" label="${tool.name} on ${on_string}: Region Dataset IDs" from_work_dir="iwtomics.loadandplot.regions.txt" />
     <data format="tabular" name="outfeatures" label="${tool.name} on ${on_string}: Feature IDs" from_work_dir="iwtomics.loadandplot.features.txt" />