# HG changeset patch
# User fabio
# Date 1496248777 14400
# Node ID 9ae17a3d1a91b208e6ff13eb4daf6132f1f3abdb
# Parent  2f24f591631e78f1fc70d2dd52c65fb32ae493e8
Uploaded 20170531

diff -r 2f24f591631e -r 9ae17a3d1a91 ._ETn_example
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diff -r 2f24f591631e -r 9ae17a3d1a91 ._example
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diff -r 2f24f591631e -r 9ae17a3d1a91 ._loadandplot.R
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diff -r 2f24f591631e -r 9ae17a3d1a91 ._plotwithscale.R
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diff -r 2f24f591631e -r 9ae17a3d1a91 ._testandplot.R
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diff -r 2f24f591631e -r 9ae17a3d1a91 ETn_example/._.DS_Store
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diff -r 2f24f591631e -r 9ae17a3d1a91 ETn_example/._Control.bed
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diff -r 2f24f591631e -r 9ae17a3d1a91 ETn_example/._DESCRIPTION.txt
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diff -r 2f24f591631e -r 9ae17a3d1a91 ETn_example/._ETn_fixed.bed
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diff -r 2f24f591631e -r 9ae17a3d1a91 ETn_example/._Recombination_hotspots.txt
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diff -r 2f24f591631e -r 9ae17a3d1a91 ETn_example/._features.header
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diff -r 2f24f591631e -r 9ae17a3d1a91 ETn_example/._regions.header
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diff -r 2f24f591631e -r 9ae17a3d1a91 example/._.DS_Store
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diff -r 2f24f591631e -r 9ae17a3d1a91 example/._Controls_regions.bed
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diff -r 2f24f591631e -r 9ae17a3d1a91 example/._DESCRIPTION.txt
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diff -r 2f24f591631e -r 9ae17a3d1a91 example/._Elements1_regions.bed
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diff -r 2f24f591631e -r 9ae17a3d1a91 example/._Elements2_regions.bed
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diff -r 2f24f591631e -r 9ae17a3d1a91 example/._Elements3_regions.bed
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diff -r 2f24f591631e -r 9ae17a3d1a91 example/._Feature1.bed
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diff -r 2f24f591631e -r 9ae17a3d1a91 example/._Feature2.bed
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diff -r 2f24f591631e -r 9ae17a3d1a91 example/._features.header.bed.txt
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diff -r 2f24f591631e -r 9ae17a3d1a91 example/._regions.header.txt
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diff -r 2f24f591631e -r 9ae17a3d1a91 loadandplot.R
--- a/loadandplot.R	Wed May 31 12:33:02 2017 -0400
+++ b/loadandplot.R	Wed May 31 12:39:37 2017 -0400
@@ -1,10 +1,6 @@
-if (require("IWTomics",character.only = TRUE,quietly = FALSE)) {
-  require(tools,quietly = FALSE)
+library("IWTomics", quietly=TRUE, warn.conflicts=FALSE,verbose = FALSE)
+#if (require("IWTomics",character.only = TRUE,quietly = FALSE)) {
   args=commandArgs(TRUE)
-
-  for (i in seq_along(args)) {
-    message(args[[i]])
-  }
   
   # get args names and values
   args_values=strsplit(args,'=')
@@ -140,7 +136,7 @@
               #file=outfeatures,quote=FALSE,sep='\t',row.names=FALSE,col.names=FALSE)
   write.table(as.data.frame(t(idFeatures(regionsFeatures))),file=outfeatures,quote=FALSE,sep='\t',row.names=FALSE,col.names=FALSE)
   save(regionsFeatures,file=outrdata)
-}else{
-  quit(save="no", status=255)
-  stop("Missing IWTomics package")
-}
\ No newline at end of file
+#}else{
+  #quit(save="no", status=255)
+  #stop("Missing IWTomics package")
+#}
\ No newline at end of file
diff -r 2f24f591631e -r 9ae17a3d1a91 macros.xml
--- a/macros.xml	Wed May 31 12:33:02 2017 -0400
+++ b/macros.xml	Wed May 31 12:39:37 2017 -0400
@@ -3,7 +3,7 @@
     <xml name="requirements">
         <requirements>
             <requirement type="package" version="3.3.1">R</requirement>
-            <requirement type="package" version="@VERSION@">IWTomics</requirement>
+            <requirement type="R-module" version="@VERSION@">IWTomics</requirement>
         </requirements>
     </xml>
 </macros>
\ No newline at end of file