# HG changeset patch # User fabio # Date 1496956261 14400 # Node ID c2cae0d8176e5113de3e1be6ad0307776849a443 # Parent 4e940b2f5a1b9dec0dc99ce77327dc5977b94c6c Uploaded 20170608 diff -r 4e940b2f5a1b -r c2cae0d8176e ._loadandplot.R Binary file ._loadandplot.R has changed diff -r 4e940b2f5a1b -r c2cae0d8176e ._plotwithscale.R Binary file ._plotwithscale.R has changed diff -r 4e940b2f5a1b -r c2cae0d8176e ._testandplot.R Binary file ._testandplot.R has changed diff -r 4e940b2f5a1b -r c2cae0d8176e .shed.yml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/.shed.yml Thu Jun 08 17:11:01 2017 -0400 @@ -0,0 +1,26 @@ +name: iwtomics +owner: fabio +categories: + - Statistics +description: Interval-Wise Testing for Omics Data +long_description: | + Implementation of the Interval-Wise Testing (IWT) for omics data. This + inferential procedure tests for differences in "Omics" data between two groups + of genomic regions (or between a group of genomic regions and a reference + center of symmetry), and does not require fixing location and scale at the + outset. +remote_repository_url: https://github.com/fabio-cumbo/IWTomics4Galaxy +homepage_url: https://bioconductor.org/packages/release/bioc/html/IWTomics.html +type: unrestricted +auto_tool_repositories: + name_template: "{{ tool_id }}" + descriptor_template: "Wrapper for IWTomics application: {{ tool_name }}." +suite: + name: "suite_iwtomics" + description: "A suite of Galaxy tools designed to work with the IWTomics R/Bioconductor package." + long_description: | + Implementation of the Interval-Wise Testing (IWT) for omics data. This + inferential procedure tests for differences in "Omics" data between two groups + of genomic regions (or between a group of genomic regions and a reference + center of symmetry), and does not require fixing location and scale at the + outset. \ No newline at end of file diff -r 4e940b2f5a1b -r c2cae0d8176e test-data/._.DS_Store Binary file test-data/._.DS_Store has changed diff -r 4e940b2f5a1b -r c2cae0d8176e test-data/input/._Controls_regions.bed Binary file test-data/input/._Controls_regions.bed has changed diff -r 4e940b2f5a1b -r c2cae0d8176e test-data/input/._Elements1_regions.bed Binary file test-data/input/._Elements1_regions.bed has changed diff -r 4e940b2f5a1b -r c2cae0d8176e test-data/input/._Elements2_regions.bed Binary file test-data/input/._Elements2_regions.bed has changed diff -r 4e940b2f5a1b -r c2cae0d8176e test-data/input/._Elements3_regions.bed Binary file test-data/input/._Elements3_regions.bed has changed diff -r 4e940b2f5a1b -r c2cae0d8176e test-data/input/._Feature1.bed Binary file test-data/input/._Feature1.bed has changed diff -r 4e940b2f5a1b -r c2cae0d8176e test-data/input/._Feature2.bed Binary file test-data/input/._Feature2.bed has changed diff -r 4e940b2f5a1b -r c2cae0d8176e test-data/input/._features.header.bed.txt Binary file test-data/input/._features.header.bed.txt has changed diff -r 4e940b2f5a1b -r c2cae0d8176e test-data/input/._regions.header.txt Binary file test-data/input/._regions.header.txt has changed diff -r 4e940b2f5a1b -r c2cae0d8176e test-data/output_loadandplot/._iwtomics.loadandplot.RData Binary file test-data/output_loadandplot/._iwtomics.loadandplot.RData has changed diff -r 4e940b2f5a1b -r c2cae0d8176e test-data/output_loadandplot/._iwtomics.loadandplot.features.txt Binary file test-data/output_loadandplot/._iwtomics.loadandplot.features.txt has changed diff -r 4e940b2f5a1b -r c2cae0d8176e test-data/output_loadandplot/._iwtomics.loadandplot.pdf Binary file test-data/output_loadandplot/._iwtomics.loadandplot.pdf has changed diff -r 4e940b2f5a1b -r c2cae0d8176e test-data/output_loadandplot/._iwtomics.loadandplot.regions.txt Binary file test-data/output_loadandplot/._iwtomics.loadandplot.regions.txt has changed diff -r 4e940b2f5a1b -r c2cae0d8176e test-data/output_plotwithscale/._iwtomics.plotwithscale.adjustedpvalue.txt Binary file test-data/output_plotwithscale/._iwtomics.plotwithscale.adjustedpvalue.txt has changed diff -r 4e940b2f5a1b -r c2cae0d8176e test-data/output_plotwithscale/._iwtomics.plotwithscale.iwtomicstestresults.pdf Binary file test-data/output_plotwithscale/._iwtomics.plotwithscale.iwtomicstestresults.pdf has changed diff -r 4e940b2f5a1b -r c2cae0d8176e test-data/output_plotwithscale/._iwtomics.plotwithscale.summaryplot.pdf Binary file test-data/output_plotwithscale/._iwtomics.plotwithscale.summaryplot.pdf has changed diff -r 4e940b2f5a1b -r c2cae0d8176e test-data/output_testandplot/._iwtomics.testandplot.RData Binary file test-data/output_testandplot/._iwtomics.testandplot.RData has changed diff -r 4e940b2f5a1b -r c2cae0d8176e test-data/output_testandplot/._iwtomics.testandplot.adjustedpvalue.matrix.txt Binary file test-data/output_testandplot/._iwtomics.testandplot.adjustedpvalue.matrix.txt has changed diff -r 4e940b2f5a1b -r c2cae0d8176e test-data/output_testandplot/._iwtomics.testandplot.iwtomicstestresults.pdf Binary file test-data/output_testandplot/._iwtomics.testandplot.iwtomicstestresults.pdf has changed diff -r 4e940b2f5a1b -r c2cae0d8176e test-data/output_testandplot/._iwtomics.testandplot.selectedfeatures.txt Binary file test-data/output_testandplot/._iwtomics.testandplot.selectedfeatures.txt has changed diff -r 4e940b2f5a1b -r c2cae0d8176e test-data/output_testandplot/._iwtomics.testandplot.summaryplot.pdf Binary file test-data/output_testandplot/._iwtomics.testandplot.summaryplot.pdf has changed diff -r 4e940b2f5a1b -r c2cae0d8176e test-data/output_testandplot/._iwtomics.testandplot.tests.txt Binary file test-data/output_testandplot/._iwtomics.testandplot.tests.txt has changed