Mercurial > repos > fabio > iwtomics
changeset 9:417b1cc9bd9d draft
Deleted selected files
| author | fabio |
|---|---|
| date | Tue, 02 May 2017 17:37:40 -0400 |
| parents | c0c7b77abf70 |
| children | 1e74ce7f9b2a |
| files | examples/paper_example/control.bed examples/paper_example/elem1.bed examples/paper_example/elem2.bed examples/paper_example/elem3.bed examples/paper_example/feature1.txt examples/paper_example/feature2.txt examples/paper_example/features.header.txt |
| diffstat | 7 files changed, 0 insertions(+), 326 deletions(-) [+] |
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--- a/examples/paper_example/control.bed Tue May 02 17:37:16 2017 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,35 +0,0 @@ -chr1 91399892 91499892 -chr1 116449079 116545079 -chr2 231381109 231481109 -chr3 47386633 47486633 -chr3 99195712 99295712 -chr3 116765114 116865114 -chr3 134349017 134439017 -chr4 68064019 68164019 -chr4 137465811 137565811 -chr4 173293016 173393016 -chr5 59044110 59144110 -chr5 94592763 94692763 -chr5 108436006 108536006 -chr5 110836898 110936898 -chr5 146669073 146753073 -chr6 99727306 99827306 -chr7 88291325 88391325 -chr7 120999784 121099784 -chr8 126860366 126960366 -chr8 127636547 127736547 -chr11 41362564 41462564 -chr11 101741527 101841527 -chr12 15210277 15310277 -chr13 91106037 91206037 -chr13 91518822 91618822 -chr13 98963030 99055030 -chr15 39087176 39187176 -chr17 58542142 58642142 -chr18 12199823 12299823 -chr20 8173704 8273704 -chr21 16255112 16355112 -chr21 45089115 45189115 -chrX 23898983 23998983 -chrX 37029585 37129585 -chrX 103593349 103693349
--- a/examples/paper_example/elem1.bed Tue May 02 17:37:16 2017 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,25 +0,0 @@ -chr2 49960150 50058150 -chr2 55914445 56010445 -chr3 140330750 140422750 -chr4 41774201 41870201 -chr4 70633719 70725719 -chr4 109344735 109434735 -chr5 15027389 15121389 -chr5 43032888 43124888 -chr5 58233354 58329354 -chr5 91279761 91375761 -chr5 119466508 119560508 -chr6 85317170 85401170 -chr6 85764072 85860072 -chr6 134625363 134717363 -chr6 147472164 147566164 -chr7 77197798 77293798 -chr7 77884914 77976914 -chr7 114807399 114903399 -chr10 46352885 46446885 -chr10 67835078 67931078 -chr12 27724692 27820692 -chr12 95522506 95614506 -chr12 117869466 117957466 -chr14 100464166 100562166 -chrX 29266748 29364748
--- a/examples/paper_example/elem2.bed Tue May 02 17:37:16 2017 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,20 +0,0 @@ -chr1 65942901 66042901 -chr1 117128102 117228102 -chr1 190338169 190438169 -chr2 227365478 227465478 -chr6 50856764 50956764 -chr6 135703067 135803067 -chr7 38228726 38328726 -chr7 51115898 51215898 -chr7 150325760 150425760 -chr8 25475691 25575691 -chr9 73374609 73474609 -chr11 55092625 55192625 -chr11 86581661 86681661 -chr12 12795284 12895284 -chr12 48151882 48251882 -chr12 83109951 83209951 -chr15 31430278 31530278 -chr15 65610815 65710815 -chr17 40766223 40866223 -chr20 17245048 17345048
--- a/examples/paper_example/elem3.bed Tue May 02 17:37:16 2017 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,28 +0,0 @@ -chr1 49721616 49821616 -chr1 95059425 95159425 -chr1 207236313 207336313 -chr2 73790843 73890843 -chr3 134465321 134565321 -chr4 43433669 43533669 -chr4 122032777 122132777 -chr5 12701747 12801747 -chr5 58501529 58601529 -chr5 152853250 152953250 -chr6 136085023 136185023 -chr6 147019529 147119529 -chr7 14192964 14292964 -chr7 125519883 125619883 -chr8 77652872 77752872 -chr8 108375665 108475665 -chr9 2984971 3084971 -chr10 978822 1078822 -chr11 18395046 18495046 -chr12 47273592 47373592 -chr12 60095778 60195778 -chr12 84854096 84954096 -chr12 95157539 95257539 -chr14 23982000 24082000 -chr16 1875335 1975335 -chr16 66789863 66889863 -chr18 64644131 64744131 -chr21 15966609 16066609
--- a/examples/paper_example/feature1.txt Tue May 02 17:37:16 2017 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,108 +0,0 @@ -chr2 49960150 50058150 NA 0.94262393 0.781642204 0.892165843 1.125914428 0.794702705 1.189725645 1.093851314 1.111683966 0.792379914 0.992690747 0.950415463 0.902397696 NA 1.103429799 0.939850937 1.084582974 1.029612124 1.065450723 1.227229075 1.23306801779749 1.06754194708522 1.03042670698303 1.21000942996344 1.27106402217427 1.27378353582558 1.22008143403318 0.919197201681516 1.0113523996945 0.918139743559695 0.789399804 0.877614552 0.938689617 1.023859386 1.089562776 0.91275793 1.083397157 1.18376341 0.900444988 1.080563235 0.959463578 0.849602699 1.014094534 0.944870837 0.889909954 0.907349556 0.945458245 1.218876455 0.965712384 0.955782111 -chr2 55914445 56010445 NA 0.997520895 1.161945571 0.975966044 0.810432058 1.012036267 1.046274443 1.054287541 0.939107794 1.234992499 1.130447455 0.826938145 0.954778392 1.125009683 0.724496099 1.108436018 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1.013772763 0.943409302 0.932904461 0.771069131 0.887278633 NA -chr12 27724692 27820692 NA 1.015018946 0.979910721 1.077201438 1.042176262 1.136547785 1.071282051 0.933189358 0.97389937 1.102683223 1.081814152 1.097688351 1.029903211 1.039816138 1.1484144 1.028167505 1.003454063 1.050279376 0.849515903 1.089662647 1.09944026944761 1.24232558529913 1.04147676324668 0.875924988135612 1.28912889422738 1.07983759214475 1.02244765008603 1.22856742143639 0.92489202854728 1.12489600373254 0.865896906 0.982478422 0.972507206 1.00177427 0.829667232 1.095968241 1.009621838 1.278520192 0.831725389 0.874245804 1.00795286 0.935140518 0.896635358 1.040388099 0.860368035 0.95764349 0.997706195 0.954654447 0.936781229 NA -chr12 95522506 95614506 NA NA 1.031666546 1.087808985 0.935597802 1.095580733 1.124058894 0.954635256 0.935366476 0.938578896 0.996753386 1.201681295 0.999254286 0.817017809 1.067874325 1.01534144 0.940595173 1.019345283 0.902362428 1.170811135 0.979181029627138 1.12814017362747 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100562166 NA 1.148973318 1.069684179 0.933394715 1.200644994 0.995147072 1.014456557 1.010270069 1.213793771 1.090105964 1.024308027 0.910265043 1.204164307 0.962205148 1.006878482 1.091468123 1.008907789 1.031151666 0.821555411 1.131775078 1.01625035922959 1.09546665116566 1.18065283125577 1.25276271380631 0.985114263004505 1.14537210220487 1.17402484133491 1.22924236788014 0.954271178646421 1.07272676300765 1.125706077 0.940649646 1.186380338 1.188637727 0.954876677 0.989332064 1.021986088 1.048798044 1.024117591 1.180388008 0.853789498 1.019676143 1.084298334 1.054422335 0.983137019 0.99301192 0.964023342 1.050010145 1.014806155 1.024565791 -chrX 29266748 29364748 NA 0.998146716 1.065576857 1.06999614 1.034773158 0.996452821 0.989102002 0.954337784 1.025052926 1.123062045 1.035990999 1.026787747 1.128633907 0.907754085 0.960094207 0.948883086 1.000720729 0.907040338 0.886843339 1.145121591 0.944890875983844 1.0934627556323 1.11256881357545 0.968442332595534 1.16194480279721 1.04174686732022 1.12511397085779 1.28509124196251 1.02785523416341 1.01100129531262 0.940463203 0.960207039 0.928384772 0.913917826 1.039510025 0.86914871 0.957290398 0.849009824 1.014513156 0.801240842 1.166336876 0.931134534 0.95919341 0.998325168 0.942213087 1.139644702 0.947916342 0.961696839 1.032069802 1.175444307 -chr1 65942901 66042901 NA 1.302221024 1.506098279 1.61587923 1.353075211 1.504981174 1.558581932 1.428164803 1.432707687 1.468903307 1.61590509 1.544818755 1.27545703 1.568466866 1.474753455 1.431158482 1.560166374 1.499815147 1.624067662 1.59810127 1.576863444 1.585501696 1.465141844 1.554057769 1.688479409 1.475457698 1.317496056 1.3880323 1.387169638 1.397978376 1.513177343 1.70166773 1.370494516 1.496616974 1.637296044 1.544647117 1.613824019 1.570946063 1.460657175 1.428547565 1.503809993 1.368158208 1.551154254 1.540993021 1.649572717 1.575530773 1.603139665 1.368021191 1.548699353 1.579569203 -chr1 117128102 117228102 1.632676937 1.353615912 1.403677392 1.61622503 1.524694952 1.273228747 1.595607867 1.476472348 1.466733325 1.483964615 1.361794708 1.520544817 1.452362482 1.352957143 1.327651789 1.367710354 1.405211607 1.487797682 1.605594306 1.605994635 1.564933338 1.410120741 1.656245352 1.547550031 1.497304449 1.324927781 1.465402382 1.508671603 1.626798534 1.550887883 1.529265504 1.539948143 1.322044105 1.452441485 1.420807784 1.537680949 1.452361524 1.514281747 1.53625711 1.620631611 1.474678614 1.533993801 1.416551008 1.384051967 1.53954691 1.519675373 1.478475529 1.652722495 1.376811267 1.280003236 -chr1 190338169 190438169 1.285951585 1.60062706 1.399167528 1.49478459 1.593256098 1.384997076 1.319266748 1.527563297 1.486234468 1.5783802 1.327015859 1.579899803 1.503158077 1.655071064 1.564234075 1.456961704 1.556691767 1.3571462 1.280703487 1.553091236 1.537090071 1.613860872 1.567871832 1.507686908 1.341320669 1.597945674 1.453033582 1.531200499 1.470046275 1.344365624 1.443755626 1.645972706 1.771498412 1.509869307 1.375187683 1.438431551 1.438961151 1.627165635 1.487139365 1.338109904 1.484812419 1.465051459 1.366784877 1.359974937 1.689786377 1.42252905 1.471916906 1.712330566 1.466280228 1.604600885 -chr2 227365478 227465478 1.538609097 1.547007001 1.546968022 1.519621079 1.414818193 1.413211559 1.54884838 1.410811613 1.482248654 1.66856628 1.448285368 1.369637679 1.52084653 1.551191154 1.736892951 1.44296511 1.406410709 1.479286525 1.696746538 1.422221993 1.543670792 1.3928711 1.398786271 1.691985187 1.50091168 1.476051191 1.646277648 1.605090133 1.546124601 1.554926538 1.376629664 1.404211265 1.5178526 1.607012017 1.374016728 1.522859006 1.418454997 1.714845122 1.595263998 1.280997445 1.558116522 1.428088399 1.589211049 1.431012622 1.609792328 1.474982409 1.380782091 1.458749217 1.458940712 1.691484724 -chr6 50856764 50956764 1.323899281 1.673677808 1.513609276 1.37616716 1.516464433 1.660656188 1.460087776 1.528491354 1.395661343 1.394049583 1.27190825 1.420503922 1.361895949 1.552814985 1.47066692 1.46450148 1.44412503 1.587294877 1.576988209 1.600904956 1.36890695 1.664299275 1.42659893 1.531735207 1.40572023 1.57021002 1.469188212 1.580491826 1.43470749 1.396287271 1.642166677 1.351396917 1.453760989 1.409687033 1.42064418 1.364076403 1.445916595 1.554484595 1.544618012 1.260999525 1.420490408 1.522044897 1.447663247 1.592453786 1.408701949 1.342112196 1.466355617 1.40531773 1.642830966 1.709380403 -chr6 135703067 135803067 1.748549982 1.580388824 1.441652741 1.486425249 1.404877337 1.436224608 1.443038894 1.467101115 1.46631933 1.388094672 1.450664264 1.483390368 1.322518331 1.567700736 1.368576803 1.381131196 1.375031249 1.538540534 1.506738842 1.389003785 1.557344145 1.383140022 1.499821547 1.462109208 1.540438797 1.462868198 1.62461282 1.459833753 1.400463017 1.657797516 1.558543148 1.444334038 1.439519833 1.372113726 1.531853052 1.442860676 1.394302014 1.499831478 1.674434948 1.43014948 1.537228183 1.495251184 1.469370711 1.619484849 1.440539199 1.604950854 1.554777175 1.498862545 1.588496177 1.29933242 -chr7 38228726 38328726 1.551833971 1.639745193 1.533187266 1.595484275 1.481693685 1.459112413 1.429647405 1.545968454 1.470090162 1.338855399 1.682489216 1.686976003 1.486726996 1.27434842 1.493545657 1.408259798 1.473880562 1.562366219 1.429460936 1.490114624 1.539147129 1.573836405 1.556053342 1.587785068 1.53249915 1.57292032 1.418600826 1.40651673 1.355542337 1.517232263 1.517409727 1.480004793 1.443410417 1.541619503 1.39821003 1.361042143 1.493724623 1.533424022 1.390168176 1.44926387 1.54695119 1.531275379 1.453895725 1.474310486 1.4926172 1.548665621 1.510373761 1.652194715 1.327399982 1.501582272 -chr7 51115898 51215898 1.55515168 1.416457183 1.463412214 1.535297415 1.579911195 1.602282422 1.475421431 1.518570565 1.438820764 1.530311218 1.471873934 1.404220277 1.460961112 1.601498315 1.557918019 1.392486875 1.611806328 1.796675351 1.367591565 1.461475311 1.618684407 1.540946004 1.376802446 1.548438856 1.393291425 1.448106655 1.545631764 1.666210804 1.537339033 1.408037648 1.440972855 1.468285993 1.459195577 1.435489195 1.563128867 1.498600797 1.346594207 1.392882696 1.54690653 1.319511464 1.529005999 1.431423342 NA 1.287023633 1.408301964 1.451621065 1.382214154 1.510724475 1.534065639 1.415039397 -chr7 150325760 150425760 1.530242873 1.409102693 1.451951902 1.583115936 1.446558506 1.522528799 1.721963053 1.6358471 1.369476141 NA 1.430878326 1.54221283 1.60404339 1.598144271 1.50188904 1.508713551 1.323258818 1.48520884 1.381436217 1.661081636 1.479449293 1.439864914 1.54757744 1.494276578 1.556910938 1.434318944 1.578707936 1.57194963 1.457977608 1.468256563 1.517622839 1.531137342 1.476905662 1.617960537 1.485477069 1.600391958 1.323086177 1.655503964 1.526179253 1.584202425 1.485136683 1.441964921 1.512824614 1.429162912 1.411731126 1.359695733 1.489453952 1.400782675 1.436733965 1.589605802 -chr8 25475691 25575691 1.48286218 1.489094935 1.507267839 1.290483149 1.446769262 1.628727871 1.546665365 1.549852103 1.464835554 1.507618199 1.548281113 1.577613605 1.402268892 1.511868999 1.513669032 1.462606524 1.58192377 1.640858629 1.37853497 1.403689299 1.637207584 1.36658794 1.433938202 NA 1.461835001 1.419831683 1.576634041 1.37664095 1.381544196 1.615682549 1.375085149 1.61696042 1.573351385 1.472411464 1.502104655 1.564947386 1.484803154 1.439785582 1.446926739 1.380794764 1.451536505 1.425704713 1.46174997 1.304249541 1.327977576 1.620229886 1.449191799 1.31387036 1.54215976 1.369651421 -chr9 73374609 73474609 1.577460233 1.501005648 1.601775513 1.453546711 1.447826479 1.332782072 1.532515829 1.737826626 1.513049243 1.368907653 1.612201564 1.611197713 1.445448405 1.682815034 1.382930571 1.462057528 1.602268339 1.363286043 1.684940812 1.390062199 1.379531825 1.501382843 1.659733019 1.328542428 1.475803149 1.420212578 1.532536211 1.417724914 1.674650225 1.461039881 1.420667412 1.403032232 1.367029746 1.809207595 1.431942126 1.568689784 1.39074308 1.542460408 1.601295748 1.565230038 1.42550521 1.459688459 1.573347637 1.652263642 1.58610571 1.648057676 1.478707761 1.491492048 1.491324068 1.476970999 -chr11 55092625 55192625 1.495567909 1.441868228 1.560760314 1.624711615 1.439076268 1.413381208 1.263007528 1.428914376 1.576871163 1.52887114 1.464159659 1.540536795 1.53048213 1.758067261 1.476072728 1.635630599 1.476714089 1.520913213 1.497706312 1.469525587 1.522770485 1.451098235 1.586453115 1.323853682 1.59520522 1.358197336 1.786089784 1.474434113 1.484887501 1.695983922 1.277912745 1.506234288 1.518892866 1.458626446 1.650890242 1.611460792 1.620192368 1.436102457 1.658616709 1.422321619 1.605146049 1.421380255 1.51973205 1.595603105 1.534803502 1.578288077 1.629329834 1.637058148 1.64408725 1.381395488 -chr11 86581661 86681661 1.583969064 1.504825856 1.50897549 1.464132686 1.526649933 1.584467498 1.428778384 1.59608294 1.386950491 1.526380073 1.508441296 1.547707612 1.571638589 1.476560433 1.308381944 1.291114043 1.538773729 1.450346997 1.62871574 1.578361221 1.397594731 1.382836467 1.475862259 1.539431829 1.455035705 1.296875512 1.449340433 1.548363785 1.377366151 1.471205684 1.52314755 1.528956501 1.557401745 1.601277231 1.486809957 1.508365075 1.479499378 1.25854246 1.502560644 1.416060148 1.433320143 1.54120141 1.507213586 1.467656699 1.384317762 1.372205196 1.491647966 1.576372981 1.507932413 1.386216654 -chr12 12795284 12895284 1.473755142 1.461496983 1.598254487 1.319746229 1.457412438 1.565818821 1.484780209 1.529445756 1.636885982 1.358667935 1.435035839 1.548745764 1.595216084 1.427006993 1.592423067 1.404092263 1.559514057 1.390219873 1.457299163 1.45098846 1.423264161 1.542821786 1.528242305 1.619917472 1.401374155 1.572142551 1.584953796 1.462544527 1.483255566 1.652472721 1.51079275 1.556494024 1.524402611 1.774031537 1.62076488 1.545281171 1.590622557 1.446925534 1.501787273 1.711678187 1.610910654 1.446160753 1.461021071 1.454411044 1.469713977 1.495393155 1.357873001 1.409840941 1.299381781 1.630689712 -chr12 48151882 48251882 1.518262718 1.408012435 1.415608866 1.582053434 1.504350046 1.436261323 1.462825066 1.503734781 1.558538141 1.596544673 1.357716374 1.504503722 1.588429008 1.358182422 1.473481881 1.514742233 1.442363773 1.403059125 1.438680404 1.392827011 1.488566071 1.418811027 1.494958387 1.463255661 1.412890435 1.485247146 1.410915033 1.258036226 1.457365283 1.437739203 1.438977147 1.388071488 1.454307394 1.54649175 1.545205043 1.377582823 1.60614025 1.464530125 1.475592002 1.488764059 1.363348963 1.465807493 1.437463033 1.602792105 1.612990888 1.601173736 1.462634082 1.298014672 1.629004758 1.537251872 -chr12 83109951 83209951 1.577133687 1.470264719 1.619770752 1.443194576 1.443189908 1.553340717 1.634669284 1.421784983 1.684583484 1.572641121 1.493028888 1.582872469 1.463693111 1.412885539 1.552816186 1.586447231 1.253385692 1.612148766 1.43895151 1.618943301 1.589650911 1.393079376 1.620235671 1.646878807 1.450107356 1.679076972 1.371139536 1.443558325 1.398089369 1.590649672 1.382042275 1.414847852 1.408878808 1.62483684 1.3640673 1.604040674 1.599542417 1.374028383 1.540071832 1.577551621 1.424052801 1.573223563 1.58604064 1.622310034 1.378954643 1.58108881 1.399936985 1.49913733 1.424181877 1.340143787 -chr15 31430278 31530278 1.537051898 1.395955138 1.420100983 1.446080555 1.476236757 1.536475753 1.599647375 1.501897522 1.392236068 1.396061387 1.636990263 1.537480569 1.37047357 1.568024465 1.362604994 1.638266594 1.417156447 1.627866944 1.495617521 1.422518351 1.483673854 1.613248237 1.528448165 1.415066957 1.349690556 1.461715948 1.459589316 1.362118809 1.44795037 1.491271775 1.48340194 1.427969363 1.606149529 1.429842765 1.501053137 1.724713773 1.509676899 1.605456676 1.532588586 1.345496158 1.571427218 1.417438862 1.655293151 1.691911882 1.485638704 1.413441099 1.380861204 1.736041563 1.487303582 1.434729671 -chr15 65610815 65710815 1.482643719 1.360755545 1.615645407 1.420556889 1.602121515 1.369420275 1.626249597 1.366047004 1.492788757 1.467066883 1.460279633 1.484123951 1.420985054 1.610940384 1.364070801 1.525381298 1.616404652 1.566421904 1.540784093 1.531020592 1.445097673 1.487162357 1.546664772 1.544604866 1.612179487 1.384848144 1.564777976 1.616896709 1.658728731 1.405059597 1.56551477 1.473788582 1.504707483 1.466676825 1.474442264 1.465753191 1.366165809 1.640033359 1.656245869 1.559534228 1.3939623 1.523015541 1.557723908 1.505032313 1.781944036 1.543055196 1.412526985 1.718920205 1.527562705 1.392847365 -chr17 40766223 40866223 1.32120959 1.493905284 1.499071789 1.361016062 1.578773451 1.560184424 1.588303229 1.419777607 1.410919263 1.689648823 1.432813801 1.42405505 1.604403383 1.528533941 1.554163756 1.593958074 1.424405591 1.584457049 1.834788665 1.530395618 1.567849758 1.41817979 1.414274148 1.438788837 1.423339572 1.505296364 1.626259227 1.557311535 1.588823585 1.802708481 1.534642553 1.505552499 1.741668445 1.528256803 1.553678336 1.467728217 1.457327202 1.681308924 1.529424612 1.44998504 1.482506494 1.632324957 1.400771086 1.58227473 1.507986347 1.598812504 1.412288378 1.614085797 1.489418485 1.467671633 -chr20 17245048 17345048 1.401959908 1.700879562 1.447844163 1.450934463 1.433641664 1.512319651 1.686287375 1.573092917 1.318204326 1.423752173 1.570824703 1.562901595 1.337686289 1.244050219 1.842917129 1.445386727 1.446416279 1.613778358 1.524747312 1.3351262 1.351768968 1.518918291 1.649076754 1.315420816 1.416079442 1.503853502 1.42514588 1.60437914 1.632469641 1.575637517 1.471095506 1.73322496 1.392861692 1.470313054 1.653250052 1.545100133 1.383478542 1.548299318 1.503419289 1.588671952 1.411015797 1.460389071 1.528538072 1.577227319 1.326101462 1.511956386 1.429028793 1.523547057 1.517710551 1.330007402 -chr1 49721616 49821616 0.774506524 1.09937788 1.063668995 1.408230447 1.087925504 0.922182889 0.821698045 0.965599315 1.106169081 1.065904344 0.939668209 1.129120638 0.931054847 1.037334472 0.78560402 1.623765644 1.725334295 1.411241283 1.384129796 1.388783552 1.747030529 1.374630045 1.514570819 1.506060702 1.494695415 1.416430393 1.495005399 1.598046711 1.554617944 1.558067485 1.610782998 1.575123599 1.495087934 1.486714521 1.635026913 0.81254344 0.920674626 0.92653306 1.207262936 0.969626435 1.188185098 0.736090629 1.305914244 1.11373631 1.03095872 1.029227912 1.258053244 0.896957247 1.17720094 0.670684164 -chr1 95059425 95159425 0.934734195 0.876218247 1.011308881 1.019556911 1.196670463 0.822218218 0.756406525 0.798442191 0.92882957 1.106866266 0.797293611 1.172904372 1.070959046 0.986491761 1.178288104 1.463209261 1.299401345 1.422061243 1.421143797 1.435273857 1.076800237 1.469294022 1.631741443 1.711088608 1.523146446 1.498227745 1.392247563 1.616686342 1.62956496 1.412124734 1.349524051 1.359128999 1.704614626 1.485797634 1.291210534 1.232733537 1.192208241 0.983477354 1.054667954 1.250317032 1.179893641 0.730158695 0.828163463 0.712228339 1.108666148 1.226119859 1.389100252 1.05895099 0.850100777 1.043891531 -chr1 207236313 207336313 1.197307256 0.972235993 1.187587088 1.149621296 0.859586792 1.021613584 0.826902018 0.942651435 1.044419719 0.70417538 0.903667203 1.042385577 0.915435541 0.944525114 0.736123138 1.5355935 1.052246691 1.694944171 1.360288449 1.578905775 1.447841736 1.514265083 1.335717522 1.506714734 1.438165845 1.380173908 1.518642081 1.366641491 1.659397049 1.489863977 1.797500818 1.426229922 1.442736956 1.390772712 1.575310878 0.973181277 1.100789783 0.77893716 1.008209272 0.958121788 1.013105532 1.145640463 1.264695537 1.025245865 1.152206528 1.235155626 1.230134741 0.898785689 0.818622054 0.785453395 -chr2 73790843 73890843 0.888687083 1.080218946 1.171330935 1.10293533 1.219875881 1.060280435 0.795139476 1.289851814 1.284518622 0.909845884 1.190723426 0.869369349 1.264177928 1.213535483 1.246832353 1.534847491 1.16881159 1.342942104 1.538452198 1.656930492 1.478489214 1.383296588 1.125127056 1.372621401 1.328525567 1.477389598 1.326670848 1.565466817 1.446539461 1.818090349 1.64655537 1.505904118 1.546069479 1.563565454 1.737354886 1.299431657 0.813401638 0.915194812 1.172889314 1.172931652 1.078050762 1.107833217 1.178544561 0.875100273 0.901845125 1.045542532 0.902101054 0.907343633 0.753221984 1.041305772 -chr3 134465321 134565321 0.86550842 1.069796845 0.688774921 0.783120486 1.090862446 1.043463382 1.370135229 1.102775153 0.893684683 1.129282797 1.239897899 1.103004515 0.918282779 1.083039171 1.254228846 1.57948429 1.291883082 1.535344824 1.552551419 1.427124312 1.641592294 1.413979964 1.570512434 1.500917868 1.461545197 1.368984788 1.694049502 1.290075776 1.631447277 1.124200828 1.606774787 1.400592071 1.484098138 1.62775977 1.296948541 0.835181041 1.121747955 1.119762621 1.048144474 1.242114799 1.214755754 1.177673274 0.964596187 1.040978304 0.962176761 1.151339231 0.951187335 0.828513125 0.839885893 1.003248636 -chr4 43433669 43533669 0.886517143 1.227863754 0.839802591 1.00350265 1.06214504 0.944423477 1.096030654 0.921828419 1.017534408 0.962226182 0.832326975 1.334745343 1.18119748 1.032167259 0.77803692 1.421420911 1.513881437 1.411222811 1.364848561 1.58802428 1.565243898 1.709008996 1.668075551 1.724084791 1.707605195 1.270300225 1.598966103 1.436942105 1.60535287 1.341940515 1.677176981 1.38933626 1.575681067 1.667194584 1.711212263 0.993366784 1.084485027 1.009726508 1.157728879 1.063798307 1.185006549 0.937423712 1.003977043 0.997670455 1.24318738 1.183696636 1.157260191 1.104977319 0.998504995 0.974062168 -chr4 122032777 122132777 0.843845378 0.924690306 1.045229019 1.261257384 1.082345089 0.776440531 1.176756481 0.974664146 1.048422531 0.9965978 0.892779057 0.968065799 0.998777269 1.208061583 1.201598007 1.830502002 1.466520877 1.410699455 1.651808985 NA NA 1.444820251 1.604197501 1.236953648 1.765086093 1.507351906 1.094886884 1.498472486 1.694009166 1.35154288 1.674590233 1.298740176 1.638881555 1.520860589 1.439582881 1.148077553 1.194599726 1.19756491 1.170776585 0.993885431 0.81439652 1.083976371 0.839829927 0.873399096 1.0072539 1.125497893 1.172817113 1.194065319 1.127489896 1.114827366 -chr5 12701747 12801747 0.854532525 0.772815574 1.001589766 0.915362415 0.799031132 0.934643197 0.972559477 0.583612596 0.85439399 0.81849105 0.7513821 0.97393926 0.489791424 0.97782212 1.067591737 1.416170186 1.353612855 1.370574445 1.496093741 1.368704748 1.713783294 1.616838596 1.474430876 1.593144169 1.443656637 1.515007224 1.655397845 1.422109396 1.482720455 1.622547822 1.508274373 1.701759306 1.505856547 1.628875324 1.272733899 0.932658994 0.896010526 0.781156085 0.712130622 1.048881761 1.093805612 1.037542099 0.919216943 1.275913268 0.937463349 0.987927404 0.953037409 1.172989802 0.926135445 0.839608899 -chr5 58501529 58601529 1.14444322 0.816838776 1.159212267 1.049591734 1.338408749 0.867632576 1.460718086 0.998554921 1.078845217 1.447644287 1.025782909 0.904847164 1.009269175 0.973616701 1.145597168 1.70734173 1.717380823 1.363210838 1.858861683 1.631026119 1.497361731 1.703733751 1.640186171 1.622595749 1.735178793 1.777645777 1.570460415 1.231681806 1.592825107 1.528549432 1.372202732 1.703823598 1.413502554 1.539912377 1.726912865 1.30915751 0.899096318 0.832285359 1.106869956 0.995799169 1.064581561 0.820353975 1.016729393 1.238078218 1.114955041 0.964576289 0.921700883 0.850995186 1.119141247 0.912827652 -chr5 152853250 152953250 0.939953327 1.183566989 1.210047275 0.958606944 1.024347614 1.251227139 0.956321141 1.079555563 1.00589087 0.894006808 1.209737773 1.061233646 0.929415416 1.370204791 0.891472616 1.753804675 1.403206605 1.605379076 1.403570545 1.534285507 1.566745845 1.636608153 1.360126035 1.600529142 1.536844354 1.51019584 1.536900475 1.589339208 1.545699974 1.71846112 1.598614953 1.638429831 1.369330284 1.781598941 1.43941903 1.012253522 1.200235284 0.826883009 0.449273656 1.173246297 1.05034578 1.031418913 1.249293992 0.954957111 0.850972895 1.223107745 1.180347266 0.886011129 1.052509996 1.157287632 -chr6 136085023 136185023 1.073646064 0.982507118 1.040660002 1.009995425 1.156614727 1.145709666 0.819621664 0.977756352 1.067359194 1.015800556 0.870374933 0.832111697 0.987661754 1.072852573 1.109385237 1.422946351 1.305508594 1.347465895 1.27247551 1.480728779 1.418907546 1.558687133 1.565534057 1.600770142 1.424620734 1.489959506 1.346859369 1.630080278 1.316662652 1.576726975 1.609785128 1.164849763 1.553612203 1.694567815 1.715251706 0.844926679 1.098703988 0.964531326 0.698862153 1.054871348 1.095641485 0.893974079 1.02224911 1.079137169 1.029194171 0.974879043 0.829590201 1.132664587 0.779804477 1.091310438 -chr6 147019529 147119529 1.147088489 1.077382517 0.883261728 1.031181846 1.128169011 0.927436213 1.099398357 0.766836152 1.047292595 0.893808454 0.978161432 1.023451038 1.043024573 1.015047802 1.292591698 1.4569859 1.590801329 1.483592503 1.375100954 1.351570271 1.598799161 1.665625687 1.500037874 1.670698565 1.269682426 1.339646415 1.601877938 1.376896627 1.72462736 1.438482518 1.610753135 1.59775866 1.550182256 1.451065498 1.532063414 0.971735251 0.937564066 0.805906628 0.89319445 0.786231757 0.877687254 1.105553472 0.928675491 1.107155556 1.173147599 0.819918656 1.084172884 1.10705634 1.253091594 1.069614102 -chr7 14192964 14292964 1.011424118 0.897666885 0.968536029 1.106187551 1.225355836 0.938801544 1.196835432 0.994942895 1.088373951 1.015660067 1.055652092 1.244818428 1.076710088 1.205509279 0.990555345 1.64880969 1.416613832 1.634012553 1.483978096 1.596726234 1.49490893 1.532746056 1.398785857 1.66381857 1.382958541 1.602372029 1.535016295 1.490285673 1.459605822 1.202125679 1.626755745 1.612444442 1.28498573 1.35024346 1.545292301 0.864180555 1.264249768 0.843733389 1.086255377 0.801396774 0.915607443 0.863665425 0.812190775 1.029208171 0.993334896 1.04935205 0.8583245 1.064990425 0.807108002 0.928763107 -chr7 125519883 125619883 0.990074941 0.943126676 0.996926878 0.918549045 1.04349092 1.120895489 1.131348319 1.235415232 1.230802226 0.938678934 1.073823713 1.045707063 0.799169121 1.073723902 0.953143382 1.456794597 1.52897821 1.316436093 1.459544061 1.226799211 1.508676217 1.371883924 1.578593207 1.438664134 1.657046576 1.579421624 1.19439758 1.428590049 1.423441419 1.266592988 1.338203684 1.551136792 1.56584353 1.398506888 1.239076751 1.270449389 0.948641881 1.251005856 1.009630258 0.823795171 1.109779733 1.23527628 1.244933846 1.092071022 0.982884261 0.837382332 1.127838473 1.404895511 1.121410783 0.906482054 -chr8 77652872 77752872 1.017345061 1.022105951 1.076478391 0.73233191 1.02420071 1.039311995 1.064312046 1.047704726 0.763368408 1.136723851 1.184268483 0.835797178 0.914512022 0.817940221 0.863148892 1.437580662 1.923988012 1.28383743 1.380289076 1.65743048 1.560966271 1.574154458 1.737056109 1.593532406 1.584322169 1.500546364 1.37672679 1.177651659 1.505791841 1.433922355 1.658288865 1.455434691 1.471050508 1.728750929 1.60800757 1.116250812 1.012984085 0.884785938 0.842300959 0.900204743 1.034634621 1.008454824 1.132171415 1.362828596 1.272296946 0.855499969 0.650162482 0.945561035 1.01433972 1.082221186 -chr8 108375665 108475665 0.957633639 0.882782341 0.823089043 1.064049753 1.035252722 1.024237171 0.654566275 0.865485334 1.09899247 1.013361138 1.065010609 0.844012616 0.96244761 1.327477519 0.970242632 1.38862222 1.616893667 1.391257175 1.447485453 1.576754216 1.593875046 1.402073594 1.439799369 1.249572668 1.577382036 1.380470588 1.480834764 1.526676603 1.441585532 1.54267876 1.145275691 1.539067877 1.154373878 1.353486963 1.666442552 0.940420497 0.876818658 0.976057859 0.958287876 0.947626467 1.160422696 1.179994939 1.048759283 1.121808274 0.810731959 1.131726956 0.963874638 1.055927869 0.890997962 1.190993149 -chr9 2984971 3084971 1.00840325 1.036322247 0.902773422 0.723208659 0.825324488 0.788931382 1.126437117 1.07334083 0.786457248 1.164924539 0.96252058 1.100080731 1.101772482 1.030838096 1.245950422 1.399277176 1.245218084 1.699923846 1.660046163 1.197411127 1.534235918 1.586418175 1.580834757 1.375276564 1.4078256 1.483882897 1.430069974 1.394274655 NA 1.493110492 1.75814408 1.46650891 1.426370234 1.498430735 1.434236214 0.994219779 0.973355626 1.116723756 0.884999404 1.005542583 0.790688193 1.153181614 0.859684043 0.854894683 1.377504155 1.089417122 1.005014313 1.092256987 0.984623563 0.860642987 -chr10 978822 1078822 0.935260532 1.277943258 1.222436275 1.062097694 0.967247129 1.038001631 0.817764662 0.85896528 1.034891625 1.043663734 1.10754271 0.993358094 1.197491704 1.241788338 1.058014308 1.657146914 1.263407706 1.340677175 1.543766743 1.467400257 1.696390134 1.601375785 1.626096985 1.33411574 1.416491499 1.343233527 NA 1.502156 1.351366466 1.31859933 1.418727086 1.529253504 1.409172834 1.679055636 1.496059511 1.335456552 1.047520988 0.894382243 0.748159852 0.89252298 1.084667827 1.001182342 1.127927399 0.838416992 1.094103497 1.215536073 0.757644313 1.081820765 0.999400216 0.983370771 -chr11 18395046 18495046 1.010775703 1.170014282 1.024495821 1.136185046 1.303739619 1.077148946 0.980345487 0.753323012 0.999663554 1.061277094 0.987580426 1.323031136 1.020811456 1.083825233 1.055211107 1.469645454 1.347846858 1.641576592 1.346259724 1.518375276 1.511621853 1.197881336 1.268010017 1.256157954 1.665167562 1.557640119 1.518562444 1.373608997 1.547351988 1.593496765 1.250681949 1.254411392 1.589076745 1.778138288 1.556355662 1.084782406 1.009288125 0.840868892 0.947623846 0.941748648 1.01843877 0.896289689 1.076114832 1.078463082 1.037570679 0.959708489 1.051208819 1.061464005 1.138695667 0.996313982 -chr12 47273592 47373592 0.965662969 1.048697886 1.007978755 1.109836092 1.038182239 0.794399413 0.809805801 1.068296065 0.881743838 0.966975027 0.882682447 0.940560238 0.709193122 0.969473291 0.93709906 1.363124392 1.564489123 1.422951193 1.507966554 1.592911148 1.670738354 1.508060553 1.383886894 1.786184113 1.544713862 1.520570699 1.619398513 1.674814775 1.652736203 1.44681823 1.412502068 1.6376281 1.49373581 1.312752939 1.472918026 1.248938098 0.916406317 1.068515075 1.117503503 0.87000034 0.926190613 0.833963778 1.008954909 1.106002181 0.68065084 0.922129855 0.925991553 0.980115336 1.412194158 1.144432586 -chr12 60095778 60195778 1.103715996 1.010702555 1.113916369 0.703151382 1.190147116 0.959698464 0.877186479 0.872841644 1.044721883 1.209553481 1.228342441 0.988047514 0.785645238 0.880489852 0.861517041 1.432828531 1.481606383 1.362091609 1.341148909 1.531147151 1.467928403 1.533141689 1.403448703 NA 1.466775647 1.497722161 1.673242368 1.263090075 1.358880953 1.555962338 1.522552356 1.453170683 1.67053864 1.581026236 1.828913061 0.93892384 0.91832223 0.929327625 1.105451265 0.828202415 1.123767397 1.110651569 0.877223589 1.130396449 1.09696945 1.050221408 0.971559904 1.016732858 1.036274716 0.924379322 -chr12 84854096 84954096 0.817068468 0.986795279 1.090934056 1.066826242 0.9218162 1.142360288 0.900600187 1.104902843 0.609110618 1.245372315 0.970953624 1.00138356 1.19827467 1.141679518 0.877622481 1.657947398 1.268699868 1.679689132 1.405426319 1.249216787 1.422905636 1.583041671 1.703856929 1.608253473 1.397708008 1.812852459 1.458405035 1.488742855 1.526259834 1.568283332 1.464668861 1.687103859 1.647815812 1.518464941 1.54369183 1.041051647 0.950660577 1.039268966 0.929469423 0.734338785 1.033401336 0.901854426 0.892342984 0.949857034 1.211968406 1.147660735 0.987069859 0.903823944 0.721047754 0.857862071 -chr12 95157539 95257539 1.0359623 1.222592717 0.91683142 0.952029062 1.111491676 1.114598558 1.071695813 1.033642966 0.556151645 1.16217199 1.086146856 0.943589832 1.3189785 0.845895209 1.121463782 1.597044175 1.561037945 1.538152325 1.47255592 1.333554298 1.295445904 1.499294818 1.529044094 1.480630449 1.394590234 1.807298453 1.294379469 1.302236227 1.674430457 1.434776099 1.540540853 1.296083599 1.651760933 1.322393405 1.579002179 0.837840564 0.778855563 0.882637729 0.596843384 1.239596178 0.805306986 1.019084036 0.952750574 0.901702228 0.976299992 1.06546102 1.082320465 0.801531543 0.683496424 1.007877207 -chr14 23982000 24082000 0.951371723 1.089598264 1.056084056 1.044878611 0.810140089 1.066007599 1.070004179 1.02748732 0.9990729 1.024576628 0.821532503 1.209345039 0.994569733 0.808516872 1.337006735 1.466385023 1.619469343 1.64595918 1.588577067 1.319456933 1.477627745 1.291969594 1.64549925 1.436778894 1.429542693 1.407597029 1.696540322 1.316669654 1.267741834 1.521446279 1.382287165 1.412104362 1.672062141 1.437193417 1.677421663 0.883193594 0.79935424 0.957824837 0.969530346 1.281093285 0.904698142 1.051782736 1.110371021 0.840645601 0.956171704 1.138627072 0.88019072 0.966437688 1.061262385 0.814126939 -chr16 1875335 1975335 0.792894667 0.884153508 1.18784207 0.991490463 0.625860911 1.006802168 1.231720434 1.231966422 1.332796977 1.097935546 0.73925416 0.782421769 0.833989158 1.170745216 1.011924236 1.365116764 1.760429899 1.536363844 1.364005372 1.439116366 1.56924511 1.704693788 1.34572901 1.363329169 1.521984836 1.470503734 1.588114655 1.408328852 1.73908358 1.451148757 1.730767784 1.52487597 1.627147094 1.785377404 1.486381747 0.862437907 0.987084014 1.416995001 0.65959045 1.126151026 0.80622999 1.002264418 0.666941899 0.920857732 0.94724938 0.754814281 0.995567495 0.935044081 0.781716111 1.235753204 -chr16 66789863 66889863 1.239312634 1.09817783 1.120963443 0.952887777 0.983098388 1.183910784 0.888674996 0.917506163 0.844134862 1.166572681 1.083046132 0.945986523 0.71426383 0.827219158 0.946726278 1.382370004 1.597465135 1.29302323 1.262760717 1.485305377 1.482766497 1.587267122 1.517360216 1.891973525 1.648473014 1.580637384 1.365750435 1.599744188 1.453453515 1.322277412 1.659312022 1.788544818 1.822600101 1.466099069 1.523599433 0.972959487 0.813890832 1.185919661 0.841418503 0.926559192 1.107426648 1.012271643 1.369332311 0.734353101 1.147288579 0.664215196 0.845493703 0.882147184 0.809127231 0.81628924 -chr18 64644131 64744131 0.769204425 0.966910211 0.809264367 0.70298943 1.14723877 0.973696784 0.910087798 0.94646829 1.058426656 0.927667349 1.187423332 1.222052504 0.880563425 0.914485239 1.010347372 1.622645212 1.482966459 1.286819625 1.534929397 1.588447902 1.490332623 1.31424966 1.453370326 1.352178982 1.775323709 1.603983032 1.693071648 1.542295564 1.681065757 1.487142254 1.552240874 1.366204502 1.576243551 1.443784374 1.378115375 1.065516368 1.040298462 1.101256079 1.162487974 1.102096504 1.127025409 1.061582332 1.245002099 0.834309456 0.75728973 1.104518163 0.922628463 0.804253156 1.001620399 0.956034286 -chr21 15966609 16066609 1.124408016 0.958928875 0.980859325 0.985836855 0.924304227 0.981319441 0.949853799 0.858050928 0.836178837 1.206331966 0.969230627 1.061200613 0.88573303 0.987056693 1.052660198 1.297451365 1.363179721 1.585535219 1.478006594 1.750420113 1.393291367 1.572557443 1.209291025 1.538532322 1.649854815 1.595757498 1.42205669 1.660538021 1.703860863 1.735418789 1.396824914 1.433365898 1.633863172 1.532339251 1.539522416 1.280749612 1.279224092 0.962647374 0.95080745 1.195498451 1.034622003 0.952643344 1.209463212 0.965927028 0.976116335 1.077560044 0.987244607 1.046203554 1.027612409 0.870263756 -chr1 91399892 91499892 0.914729028 1.037886693 1.156950788 1.054339714 1.058272447 1.002161175 0.873489002 0.873100412 0.928712683 0.941325621 1.06739894 0.909275169 1.100938875 1.053429126 NA NA 1.096492926 0.902578292 0.821718065 0.909063176 1.125986477 0.96299199 0.886361986 1.197357949 1.105858907 1.118309383 0.89184945 0.921613353 0.961394603 0.94212054 1.041792277 0.846036296 0.903782108 0.92632447 1.016177881 1.018719948 0.863466004 0.911534382 0.909397861 0.882437981 1.200227303 1.022867075 1.008249592 1.133872366 0.917808428 1.009801533 1.078007804 1.057892112 0.983519376 1.063014991 -chr1 116449079 116545079 NA 1.049234869 0.972429436 0.943485097 0.877213727 1.076099557 1.059647065 NA 1.103976436 0.879172377 0.952455625 0.872450869 0.734632501 0.975852194 1.159684818 1.03479249 0.958716781 1.008821504 0.894048456 0.862250242 1.085632735 1.035706107 1.282637135 1.053448817 0.958843715 0.907730747 0.964823765 0.972508804 0.964761127 1.210224634 0.870817358 0.970216008 1.098602698 1.019858847 1.041511995 1.105424911 1.066979584 0.972137682 0.900068042 1.009451791 0.910760202 0.960315924 1.055586038 0.920385441 0.94547208 0.825917997 0.803391879 0.861973619 1.077735566 NA -chr2 231381109 231481109 0.938545921 1.053550999 0.990663048 1.245455475 1.034765837 1.13788663 1.036187514 1.137000159 1.065831916 1.17340059 1.02717029 0.843654669 1.003967015 0.999772218 0.899826992 0.953521216 0.846461151 0.819825257 1.04835666 0.938116991 1.045088574 1.141602118 1.02299139 0.984519737 0.936479392 1.101126338 1.095085048 NA 0.868292018 0.955809714 0.932906363 1.005716987 1.043207539 1.000888605 0.901074615 1.03317671 1.081396012 1.189679188 0.970074554 1.020751855 0.913959553 1.096760355 0.993266118 1.171556261 1.048664621 0.980570286 1.017010153 1.020704917 1.162521431 0.92719112 -chr3 47386633 47486633 1.062076296 0.970223713 0.857507001 0.955413898 0.97513391 0.947918937 0.979505671 0.961090193 NA 1.047936634 0.949493968 0.883167547 0.984016989 1.127854611 1.057587579 0.942516002 0.926117765 NA 0.826483736 0.982811705 0.758443623 0.966492886 0.900090861 1.125094333 1.086001645 0.962300692 1.24245323 0.81638103 1.080519852 NA 0.905734959 0.892682204 0.859544312 1.029005919 1.108887612 1.005043209 0.966707798 1.064774949 1.144266882 0.963403426 0.920338501 1.161040401 1.091159949 1.082416199 1.192985671 0.820435008 0.952040088 1.083844662 1.026328753 0.992115409 -chr3 99195712 99295712 1.270158442 0.995363567 1.009373606 1.063165354 1.077985537 1.017346167 0.914371675 0.831037703 0.960400409 0.970195668 1.206611242 1.143210132 0.971685836 0.952129359 1.161054152 0.751282904 0.882267119 1.094428147 1.036866939 1.085634288 1.051962363 0.834830764 1.032239294 1.010407458 1.00547685 1.125104423 1.09981574 1.053426307 0.938893154 1.03356561 0.801835505 0.979682864 1.208857791 1.033055987 1.074457136 1.072561085 0.924398079 1.055802211 1.018235171 1.09445266 0.950697693 1.249451365 1.156165349 1.045257813 0.920535332 0.840654315 1.018017762 0.860765984 1.021403365 1.068010374 -chr3 116765114 116865114 1.011955736 0.98765743 1.018370615 0.973626745 0.983619287 0.797242931 1.132136785 1.025294949 0.833481735 0.930307034 1.175109735 1.000314335 1.144801004 0.971289786 1.122934947 0.923644877 0.982800145 1.061217333 0.972841216 0.944613741 0.952009223 1.203276335 0.897025771 1.171280902 0.960588413 0.972936487 0.99224173 0.809816433 0.960560685 0.987702466 1.171594079 0.841790062 1.016820338 1.100587198 1.080960555 1.010151231 1.105527512 1.04039984 NA 0.897955139 1.104482838 0.869435803 1.143100693 0.891344695 1.015252497 1.033425813 0.958320359 0.973617629 1.101202439 0.903418169 -chr3 134349017 134439017 NA NA NA 0.901861524 0.948306551 0.977357488 0.948991386 0.864337323 1.134167589 1.165142521 1.028823385 1.155476971 0.997362462 0.895489419 1.13502581 1.106020284 0.830848914 1.000364014 1.226289379 0.945891472 0.843971421 0.85973254 0.833548561 0.888844157 0.886433648 1.007030585 0.874160496 1.053381326 0.986145177 0.933349455 0.931832747 1.378088632 0.770057611 0.868137641 1.05435661 0.806668276 0.886176998 0.82183629 1.027860137 1.00939276 1.02480877 1.086388152 1.08573161 1.036136609 0.957746287 0.982099584 0.928757105 1.065783792 NA NA -chr4 68064019 68164019 0.987445626 0.988342445 1.08188922 0.876572175 0.821189012 0.937868171 0.905789887 1.029453118 0.877476312 0.941815527 0.91770701 1.264816422 1.179945283 0.875126612 0.893508649 0.880981265 1.092743051 0.949604569 0.8306799 1.049429618 0.922000394 1.016305233 0.894297439 1.031539922 1.061166273 0.880679739 0.885104341 1.018243485 0.913120987 1.008089224 0.983141943 1.04977725 0.96214582 0.863972144 0.945472161 1.097281334 0.917030232 1.055235914 1.042382891 1.01607001 1.014746216 0.933625276 0.873625832 0.831846625 1.162116804 0.984092453 0.978628262 0.985733944 1.006231367 1.10708881 -chr4 137465811 137565811 1.060050527 1.047031617 0.868666952 0.928315013 1.014795595 1.178428425 1.009041423 0.919518677 1.038331513 0.988696597 1.149264659 1.11424249 1.038197617 1.021778678 1.00654938 0.907240256 1.029844058 1.090761552 1.000744276 0.958539871 1.155082984 1.165660409 0.962556475 1.065622279 1.076208758 0.930910521 1.1738051 0.93669891 1.065596918 1.101628498 0.874310082 1.009399238 1.001961146 1.083464825 1.056185933 1.061103167 0.86502318 1.200676736 1.153788359 0.759198252 1.11483377 0.996170494 0.91644432 1.167465883 1.092555333 1.046405464 0.961445055 0.931607465 1.147957647 1.119287239 -chr4 173293016 173393016 1.047565034 1.040902514 0.864028881 0.957061102 0.894159471 1.120136772 1.048714465 1.108382628 1.007684407 1.04607039 0.993684206 1.116214089 0.974887057 0.914892294 1.038778824 1.16173203 0.961858968 0.974977272 1.096123572 1.0818147 1.064611635 0.869308794 1.045805115 0.910994784 1.100235178 1.003461962 1.015930561 0.90858743 0.844162164 1.108120083 1.051114901 1.021908588 1.037515318 1.032546662 1.042075805 0.937427914 0.991194078 0.932885807 0.995898278 0.845646207 0.903065117 1.104393524 1.128828787 0.862876543 0.920517786 1.020336197 0.998157937 1.129664661 0.891510312 0.976494824 -chr5 59044110 59144110 0.970045968 1.035854602 1.076957707 0.868116041 0.943722234 1.01810034 1.082896356 1.173547701 0.940731496 0.922794533 1.097132769 1.035971887 0.918608256 1.139931611 1.028122081 1.08713688 1.005470342 1.097729112 1.054585171 0.970111787 0.986697163 0.968674577 0.788177841 1.051221045 0.983563209 1.009326698 0.84639942 0.929584908 0.964155822 0.987506987 1.064683589 0.980337244 1.000963308 1.097581733 1.127080302 1.059790743 1.290726438 0.908737178 1.049293994 1.0787095 0.926669462 0.84701686 1.021779977 1.112257566 0.946654683 0.85669554 0.997600828 0.97256597 1.078943311 1.018956354 -chr5 94592763 94692763 0.928602456 1.005037589 1.057250105 0.814020845 0.862531638 1.012471033 1.080297723 1.009161792 1.005879001 0.951436155 1.08341646 1.032610539 0.889610093 1.112491305 0.911120757 0.934783159 1.020754024 0.994811881 1.053992426 1.092865891 1.094989867 0.957525274 0.919268006 1.185104537 0.976799603 0.953021143 0.827747807 0.925161678 0.735726392 0.963343194 0.931377999 1.026758032 1.046664938 1.120858014 0.785820754 0.925371237 0.934089148 0.965085762 1.035389464 1.053209248 1.080799805 1.02510273 1.068637237 0.947897996 0.993154687 0.985610712 0.93588839 0.872861497 0.990891669 0.815251113 -chr5 108436006 108536006 0.976777568 1.114317435 1.074294878 1.067811873 0.927200917 1.122791569 0.990458503 0.824568119 1.036172898 0.994967545 0.844142642 1.080725926 1.056030032 1.043489457 1.239087473 1.044573655 1.05149881 1.021278653 1.077580918 1.128425749 0.913103164 0.906677612 0.938278179 1.040788042 0.944339447 0.919893475 0.959450864 0.901883573 0.999593684 1.006764447 0.916830154 0.828742202 0.930393386 1.009075789 1.039012455 0.969632207 0.86797819 0.853184582 1.04870954 1.051494644 0.989970312 1.094537654 0.984437872 1.119510991 0.894016224 1.107975259 0.93353325 1.106413914 1.050239905 0.988529446 -chr5 110836898 110936898 1.016238302 0.859928543 1.069132694 1.080131787 0.846751387 0.93376195 1.123540845 0.990209748 0.880756108 1.117560312 1.139640033 0.852271719 0.925605607 1.120401723 0.925159914 NA NA NA 1.092219153 0.966962463 1.165682604 1.001157436 0.897117352 1.060288237 0.997842493 0.954483836 0.958584025 1.02781325 1.071460999 1.092190908 1.025025892 0.697306014 0.962693586 0.936097212 1.034195294 0.958948517 0.905379517 0.959033351 0.8527043 1.028285758 1.025310803 1.136678427 1.008355953 0.924940387 0.910533514 0.942733172 1.213465524 0.908563399 1.082582897 1.007646033 -chr5 146669073 146753073 NA NA NA NA 0.941409053 0.879074162 0.975704916 1.182113923 1.084857652 1.01486748 1.027171377 0.973100075 1.086701223 1.087643832 0.840572785 0.942171473 1.16415223 0.965976752 0.911574418 0.947409112 0.849802802 0.898701955 0.998041244 0.854518159 0.964577142 1.192107775 0.978314217 0.842872613 1.012263246 0.848339746 1.002486202 0.987401668 0.98683414 1.182856597 0.980270013 0.766046299 1.063669332 0.979494111 1.023073785 0.998041848 1.004354924 0.971294794 0.896919534 0.793968271 0.957832572 0.908206903 NA NA NA NA -chr6 99727306 99827306 1.04163323 1.091997928 0.978060114 1.033992859 0.963823351 1.048397575 1.038155167 0.871379686 0.931780687 0.969235245 1.030309945 1.127994855 1.034616411 0.971594933 1.105190985 0.886570733 0.943790186 1.148648094 0.975506109 1.230209638 0.849296043 0.949088641 0.902232885 0.898018554 0.915111211 0.908299603 0.965961365 0.9425258 1.00542318 0.926189155 0.990176039 0.888136178 0.987182899 1.051381743 0.77060758 0.875543712 1.04224684 1.066931235 0.901480706 0.948260703 0.93078043 1.038106435 0.938329808 0.920533482 0.904269315 0.914690847 1.1041295 0.933002405 1.020502155 1.001979512 -chr7 88291325 88391325 1.157645799 1.053708771 1.056155629 0.925868689 0.936509921 1.257706773 0.960978216 1.071637162 0.96834958 0.877733353 0.90601784 0.945901393 1.005724688 0.900311385 0.99851067 1.196980286 0.926220043 0.927305353 0.935938599 0.781456543 1.005790264 1.035573096 1.076224891 1.045980024 0.962489382 1.080515657 1.053809624 1.143026 0.849358629 0.991330587 1.05551539 1.005324457 1.044663238 1.214387936 0.875654383 1.206789772 1.157634328 0.844240225 0.877658109 1.191713721 1.010479627 0.984994219 1.027423933 1.067833572 0.992211647 1.053494225 0.931717271 1.023507006 0.877417002 1.053462557 -chr7 120999784 121099784 1.023838305 1.027880659 1.035040075 0.837700411 1.039695872 0.919676844 0.991652209 0.978606678 1.162461053 1.054628134 1.0079066 1.021551881 0.998942298 0.908477539 1.069451976 1.075926232 0.973283773 0.899089005 1.077930894 0.930064217 1.114997005 1.195836244 0.952071197 0.952123668 1.044794765 0.899667504 1.101462596 1.044709945 1.198680841 0.953606177 1.020753964 0.991954499 0.862834745 0.970822826 1.090065507 0.929006592 1.148104027 0.926931169 1.045315829 0.925853787 1.056536145 1.161961388 1.010943 0.829965335 0.893979398 0.884033676 0.900094684 1.211609545 1.155290664 0.994098571 -chr8 126860366 126960366 0.884364681 0.932943346 0.828582353 0.908535158 1.102726299 0.981912397 0.839456681 0.884576719 1.014742667 1.014405543 0.93225706 1.05743299 0.914159672 1.044681847 1.03394101 0.923193333 1.072990311 1.112608791 1.058623385 0.968019686 1.018046712 0.894269597 1.075877924 0.935746744 1.150974122 1.236902006 0.785226865 0.819136217 0.866182795 0.708723684 0.979663895 0.842238685 1.098704633 1.175565132 1.020374496 0.921735827 0.95442105 1.014669267 1.21581105 1.063189912 1.079098868 0.96332199 0.908262444 1.132700173 0.7900559 0.904878042 0.882705353 1.107062633 0.937505272 1.007892277 -chr8 127636547 127736547 1.029357928 0.918536414 0.995512291 1.044577563 1.019501153 NA 1.04440564 1.0619479 1.074694175 0.946383953 0.91353213 0.830281166 1.049659439 0.985248033 0.993826335 1.068110005 0.948125951 1.062712393 1.102401928 0.968190902 1.005755362 1.107927369 0.946664528 1.089501737 1.030293411 0.882000747 0.973074572 0.963563569 0.844179926 1.026847205 1.044984637 0.89298441 1.198385601 1.044027494 0.872414846 1.059535668 1.081883757 0.969249595 1.195340364 0.968422568 0.834786958 0.883629162 0.939353917 1.018170662 0.972911692 1.226283837 1.009700805 0.961435994 1.065376785 0.911305817 -chr11 41362564 41462564 1.008820676 1.066409144 0.888694378 1.036316392 1.04609798 1.139077813 0.940707228 0.987082259 1.132422318 0.992857069 1.085377204 1.051787982 0.832415632 0.859449819 0.794672671 0.942685377 0.880702646 1.138858814 0.919380791 1.066408809 0.915705078 1.027999511 1.045165447 1.096697533 0.88639158 1.078950047 0.954650741 1.03497876 1.043128394 1.026042357 0.874742378 1.05925962 0.890848054 1.005557543 0.923529329 1.068135779 NA 1.06935397 1.072911803 1.052583684 0.935410209 1.077008958 0.845207708 0.857151679 1.162929721 0.912046529 1.02760565 0.98798691 0.893396708 0.845473274 -chr11 101741527 101841527 0.942359255 1.089415586 0.95962796 1.086020643 0.804735744 0.949953785 0.860643517 0.901069295 1.078502106 1.142577754 0.898006258 0.962207068 1.062820092 0.915224191 1.2245536 1.221909587 1.017638247 0.900236829 1.118932903 0.95774623 1.060416607 1.056930317 0.965482811 0.940023636 1.02377161 0.989756621 1.028709516 0.96778865 0.808453811 1.055195494 0.959349483 0.926905436 0.91275336 1.048022623 0.906544709 0.880093291 1.125019236 1.178249577 1.115574076 1.080330372 0.964662226 0.986228798 0.971028346 0.98093756 0.887887365 1.003302315 0.893245122 1.037853655 1.012259621 0.869775917 -chr12 15210277 15310277 0.944169011 0.866288448 1.032204712 1.076020134 0.998296658 1.072217097 0.983797829 0.952864734 0.973436855 0.969758719 1.103519618 0.940267894 1.079870055 0.854254063 0.99674239 0.968500489 0.941869744 0.989430785 1.02352565 0.939188771 1.038692089 1.030154949 1.033560856 1.019759029 0.961135365 1.002901485 0.956996426 1.092161703 1.04320007 0.98614937 1.000051705 0.968860869 0.9626575 1.061604261 1.161967912 0.933498173 0.95000128 1.041967207 0.907089514 1.05533374 0.878320782 1.110665617 1.074861319 1.110063055 0.989652093 0.875873818 1.001263475 0.95871525 1.04047788 0.990123198 -chr13 91106037 91206037 1.262571776 0.734735991 1.095391967 0.93808342 0.943646564 1.016764901 1.076257711 0.91340799 0.773725217 0.877179005 0.944089177 0.932135594 1.09073639 1.171475272 0.847277034 0.873679195 0.947872224 1.096495555 0.891153819 1.044813657 1.120443638 1.094289139 0.887785295 0.98772 0.730023414 1.01333116 0.919504798 0.929504755 0.998365502 0.939298442 1.053110929 0.875675696 1.193355068 1.118871696 1.013686623 0.985414672 1.077144924 1.073912848 1.057814608 0.92579275 0.906803056 0.926983874 1.05931726 1.069924211 1.103030121 1.03742299 1.13985435 1.031038036 0.647621622 1.027176556 -chr13 91518822 91618822 0.960899438 1.082342887 0.99789296 1.08475727 1.217319579 0.950400644 1.127502974 1.009670828 0.878158897 0.884695487 0.950179332 0.967915323 0.966185856 0.935244046 0.842553541 1.077816919 1.057232253 0.920317829 0.8929266 1.084584372 1.136125371 0.891764372 0.986278036 1.047345444 0.90074013 0.874658634 0.955536126 0.749422854 1.046901182 0.899296201 1.047364576 1.178875606 1.112788723 0.940451913 0.914074588 1.068716376 0.880647677 1.115865959 0.871057152 0.918695368 1.009588011 1.00955855 1.067471226 0.983103684 1.284847545 1.075543346 0.860343571 1.02714843 0.985479642 0.845989848 -chr13 98963030 99055030 NA NA 0.998124088 0.941233349 1.020516778 1.082098359 1.061763926 0.86715405 0.890546661 1.062189059 1.120522574 0.949540379 1.063080486 0.927945555 0.950233362 1.139649245 0.962486651 1.122056742 0.965504093 0.901575197 0.977554404 0.909824633 NA 1.041517243 0.830846694 1.083339508 0.946254143 1.061817057 1.026686856 0.944602297 1.098756992 1.110115287 0.866377042 0.947826745 1.141915662 1.126549339 1.020088449 1.136977036 0.871538906 1.032255307 0.899455628 0.93392765 1.010541135 0.9187502 0.901022216 0.866013025 0.910701809 0.941822998 NA NA -chr15 39087176 39187176 1.075754549 0.984732204 1.017598921 0.926487241 1.081709811 1.134898895 0.989137706 1.112449577 0.967471164 1.176075636 1.105072921 0.997946966 0.953296698 0.761845735 1.068734977 0.86028425 0.978115025 0.892134595 1.027014407 0.96539193 1.106402866 0.929669032 0.932142456 0.923985493 1.167746462 0.91904067 1.036507584 0.897959204 1.015372539 0.97252977 0.796445742 0.921793832 0.922546715 1.095436262 0.821887092 1.091471469 0.944683383 1.03508594 1.006227039 0.969964744 1.083842018 1.000410228 1.148132641 1.053299423 1.02686973 0.986857834 1.099602558 0.907362807 1.005225175 1.074648759 -chr17 58542142 58642142 1.152551451 0.813427107 0.829069799 0.875869268 0.928133603 0.967465743 0.902621356 0.877372441 1.094621847 1.17912888 1.014956933 0.851645933 1.050341137 0.962627858 0.956843417 0.987129683 1.13593474 0.900420294 1.123320125 0.92884971 1.081817641 1.185064263 0.959119041 1.110039712 0.958483624 1.190948203 1.051043364 1.040039908 0.916771865 1.004831251 1.05502407 1.095368983 0.989283483 0.879670448 1.09174434 1.064317641 0.86725729 1.007779226 1.009270559 1.059761551 1.056111543 0.886379787 0.854492309 1.043384065 1.000133905 1.022200835 1.220412256 0.832970316 0.803218042 1.000386525 -chr18 12199823 12299823 1.263654694 0.988269655 1.035978479 1.116959535 0.865032018 1.172649963 0.83698752 1.075913181 1.149530266 1.079699219 0.933023991 1.076489959 1.029621239 0.903293561 0.804310598 1.022997054 1.031882692 0.832547062 0.933932575 1.051815306 1.097535287 1.041913128 0.82933811 1.045265729 1.100145352 0.984170134 0.973632283 1.090727064 1.028455044 0.986754629 0.885206841 0.936002282 1.078601604 1.030277211 0.984574816 1.007336494 0.821501009 0.874013881 1.07621773 0.948910844 1.18818458 0.785530297 1.197901659 0.875093235 1.114923051 1.055820922 1.089244152 1.232197494 1.030509037 0.938091223 -chr20 8173704 8273704 0.970809408 1.117932082 1.06303146 1.007305847 1.012419213 1.114443349 1.037593987 0.997913206 1.124896156 0.795070067 1.126326854 0.885342594 0.893283558 1.080229541 1.043566132 1.064241313 1.073251079 1.164836602 0.77262778 1.091781567 1.066619573 1.141396027 1.032737097 1.013127889 0.964386912 1.056496569 1.007627293 1.085610218 1.032050085 1.019055263 0.943978981 1.034148636 0.990345945 1.014039798 0.922814154 0.881603932 0.827687325 1.083375603 0.946779408 0.939221292 0.819590588 0.790962263 0.999039926 0.92481105 1.035965206 0.852361627 1.181121901 0.994575516 1.060331362 0.983666463 -chr21 16255112 16355112 1.177105519 NA 1.071517224 1.030859496 1.089008921 1.039659673 0.883594013 1.21009346 0.826187452 0.961992291 1.044089309 1.057497966 1.129194301 0.875974161 0.921098831 1.02470614 1.15795123 0.823673836 1.114013422 1.046857781 1.057536457 1.06438401 1.033940269 1.078392268 1.014473553 1.132325796 0.898022689 0.94228443 0.634163551 1.13654097 0.978434334 0.901865446 0.979448392 1.115154429 0.88726117 1.039289778 0.934290937 1.124469328 0.981034716 1.079334172 0.890674582 0.99304165 1.036942115 0.909604473 1.014269152 0.862691129 0.908143072 0.98482788 1.002454774 1.170056591 -chr21 45089115 45189115 1.128766975 1.14005722 0.96116741 1.082705974 0.963650005 0.827323587 1.067023661 0.917567025 0.989751759 1.010219166 1.082917953 1.245031656 1.151150253 0.997437239 0.858137326 0.98198696 0.850794707 0.99180389 1.082099157 1.008377358 1.08751314 1.073916835 1.201830084 1.004069188 1.006114424 0.792034461 1.129284618 1.007236686 1.01976535 1.030684776 1.019549208 0.966675886 1.055072414 1.011617895 0.839540579 0.980997231 1.04627179 0.816653056 1.033705401 1.054165848 1.052020039 0.816863479 1.171636489 1.147925102 1.14014694 1.053253523 0.879102941 0.967322915 0.941265221 1.071801399 -chrX 23898983 23998983 1.095956071 1.035904265 0.757938585 0.954327563 0.928770006 0.847426753 1.089608835 0.955892591 1.130729633 1.082264273 0.958715215 0.90091568 0.942003917 1.010964789 0.940231198 1.180425637 0.950425986 0.950483043 1.051233349 1.048891592 0.776983412 0.910588698 1.239470441 0.95990234 1.076000458 1.025641956 0.947949452 0.804913701 0.910973613 1.022080299 0.980462332 0.96781169 0.932764086 1.190362601 1.027322553 1.149071578 0.889516954 0.935487957 0.946885545 1.073126316 0.980312197 1.043955933 1.101269957 1.064177944 0.923214112 1.089247244 0.884482905 1.029376267 1.157709555 0.984456503 -chrX 37029585 37129585 0.98122434 1.011630647 1.230283632 0.891470471 0.783631045 1.066342819 0.927321445 1.085527539 0.993568587 0.843088512 1.086477024 0.875131243 0.978607197 1.02131458 1.114798021 1.089478532 1.054893683 0.984181112 1.218871163 0.97708926 0.90916199 1.037263452 0.99435055 0.913535387 0.885835686 1.120085293 0.746787617 1.090131115 1.096296609 0.963270724 0.986765333 1.252219318 0.980515077 0.822161692 0.875149266 1.093895114 0.936458408 0.93051396 1.066030352 1.021325533 0.985920595 0.852340716 1.041090942 0.962076024 1.131767695 1.160041034 0.778883063 1.010510275 1.181604274 1.043847295 -chrX 103593349 103693349 0.936415479 0.859715361 0.976667748 1.004099321 0.929985084 0.956524376 0.975445569 0.918743462 0.769553884 0.893753739 1.038432231 0.929975777 0.992950192 0.939068598 0.850373566 1.077598699 0.944390212 0.903804745 0.929229543 0.910550822 0.874731622 1.017930204 1.034993706 1.028853504 0.953183688 0.956823258 1.025889085 0.948570076 1.017572603 1.046571516 1.086105993 1.084022344 1.153320158 1.07270122 1.080699057 1.003759777 0.85552851 0.952183729 1.077855327 1.041314276 0.932338492 1.064333457 0.890314599 1.188471466 1.026837475 0.893522714 1.013810089 0.903361049 0.799854911 1.017848509
--- a/examples/paper_example/feature2.txt Tue May 02 17:37:16 2017 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,108 +0,0 @@ -chr2 49960150 50058150 NA 6.06024603927522 5.66339250643023 5.98491788533868 5.89566164014674 5.67509100885992 6.17718485715483 6.25525988941349 6.13419496045146 6.02309132104361 5.6907852827365 5.97696019147247 6.06898504563158 6.19811248450889 6.11789029560194 5.97378475421173 6.09032932757932 6.119340786178 5.97367320592689 5.91695929095814 5.95788266535406 5.85958975316589 5.92692167975047 5.97530489883431 6.19465295805737 6.07337738045431 6.11984936793537 6.18335296396836 6.27317740607339 5.73683764564453 5.78534168878846 6.0373119165995 6.05861267940555 6.06109416553306 6.24744462437121 6.13770460019817 5.51738475681524 5.88449206940354 5.95431028164373 5.95196302766881 6.27714436237652 5.33466843886919 6.29287732225571 5.98461532145612 5.90741580769078 6.27255947181976 6.16373285780621 6.18430980153562 6.12992725731244 6.19047386112561 -chr2 55914445 56010445 NA 6.13008749558118 5.87352059082773 6.2566521440462 5.92289748004593 6.02398354047441 5.68218631698084 6.08277768737753 5.82779858566119 6.17994880126712 5.97336222591632 6.31857375045222 6.32315934372086 6.06822127014921 5.68691143179597 6.18768497725833 5.87850638348253 5.55565496481075 5.99284618170363 6.05793491041518 6.18620311137425 6.15627335184857 6.24983411318564 5.88945149315978 6.00051893928219 5.8869710901493 5.92380205361588 5.89466003933414 6.05582116637007 5.79486331060924 6.01021601264105 6.43336115522525 6.25277302758657 6.15363689682735 5.79577949256957 6.03590992906734 6.02704208678425 5.80098998550242 6.09201062256286 5.79947850351777 5.71621024240232 6.0743380359125 6.01480553908656 6.11003461894382 5.98852602343237 6.0203716788541 5.89040878553694 5.79214164950517 5.85862014677883 NA -chr3 140330750 140422750 NA NA 6.05197882398586 6.22741374393606 5.83933224256848 6.11226992687831 5.88576889843699 5.86422741431383 5.91277666135517 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