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comparison search.xml @ 2:4291c9d1ff07 draft

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Uploaded 20180124
author fabio
date Wed, 24 Jan 2018 11:26:24 -0500
parents 00d6e82d74e9
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1:ad40eae04cdc 2:4291c9d1ff07
8 </requirements> 8 </requirements>
9 <command detect_errors="exit_code"> 9 <command detect_errors="exit_code">
10 <![CDATA[ 10 <![CDATA[
11 python '$__tool_directory__/search.py' 11 python '$__tool_directory__/search.py'
12 12
13 --treeid '0' 13 --search 'rrr'
14 --search '0' 14 --sthreshold ${sthreshold}
15 --sthreshold '${sthreshold}' 15 --exact 0
16 --exact '0'
17 16
18 #if $conditional_input_zero.inputtype_zero == '0': 17 #if $conditional_input_zero.inputtype_zero == '0':
19 #set file_paths = ','.join( [ str( $f ) for $f in $conditional_input_zero.txtfiles ] ) 18 #set file_paths = ','.join( [ str( $f ) for $f in $conditional_input_zero.txtfiles ] )
20 #if $file_paths is not 'None': 19 #if $file_paths is not 'None':
21 --files '${file_paths}' 20 --files '${file_paths}'
43 </when> 42 </when>
44 </conditional> 43 </conditional>
45 <param name="sthreshold" size="3" type="float" value="0.5" min="0.0" max="1.0" label="Threshold applied to the search algorithm" /> 44 <param name="sthreshold" size="3" type="float" value="0.5" min="0.0" max="1.0" label="Threshold applied to the search algorithm" />
46 </inputs> 45 </inputs>
47 <outputs> 46 <outputs>
48 <data name="output" format="txt" label="${tool.name} on ${on_string}: AllSome Sequence Bloom Tree Search Result" /> 47 <data name="output" format="json" label="${tool.name} on ${on_string}: AllSome Sequence Bloom Tree Search Result" />
49 </outputs> 48 </outputs>
50 49
51 <help><![CDATA[ 50 <help><![CDATA[
52 Authors: Fabio Cumbo, Robert S. Harris, Chen Sun 51 Authors: Fabio Cumbo, Robert S. Harris, Chen Sun
53 ]]></help> 52 ]]></help>