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comparison test-data/out2.biom @ 1:658ad8b92341 draft default tip

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author fangly
date Mon, 29 Jul 2013 07:01:57 -0400
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0:7a7ecf9b9df7 1:658ad8b92341
1 {
2 "generated_by" : "Bio::Community version 0.1",
3 "matrix_type" : "sparse",
4 "date" : "2013-07-27T03:32:37",
5 "data" : [
6 [
7 0,
8 0,
9 78.997461928934
10 ],
11 [
12 1,
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14 21.002538071066
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16 [
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21 [
22 2,
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26 [
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29 25.5875077303649
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31 [
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36 [
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46 [
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48 2,
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50 ]
51 ],
52 "rows" : [
53 {
54 "metadata" : {
55 "taxonomy" : [
56 "k__Bacteria",
57 "p__Cyanobacteria",
58 "c__Nostocophycideae",
59 "o__Nostocales",
60 "f__Nostocaceae",
61 "g__Dolichospermum",
62 "s__"
63 ]
64 },
65 "id" : "1"
66 },
67 {
68 "metadata" : {
69 "taxonomy" : [
70 "k__Bacteria",
71 "p__Firmicutes",
72 "c__Clostridia",
73 "o__Halanaerobiales",
74 "f__Halanaerobiaceae",
75 "g__Halanaerobium",
76 "s__"
77 ]
78 },
79 "id" : "3"
80 },
81 {
82 "metadata" : null,
83 "id" : "4"
84 },
85 {
86 "metadata" : {
87 "taxonomy" : [
88 "k__Bacteria",
89 "p__Proteobacteria",
90 "c__Gammaproteobacteria",
91 "o__Enterobacteriales",
92 "f__Enterobacteriaceae",
93 "g__Escherichia",
94 "s__"
95 ]
96 },
97 "id" : "0"
98 },
99 {
100 "metadata" : {
101 "taxonomy" : [
102 "k__Archaea",
103 "p__Euryarchaeota",
104 "c__Methanomicrobia",
105 "o__Methanosarcinales",
106 "f__Methanosarcinaceae",
107 "g__Methanosarcina",
108 "s__mazei"
109 ]
110 },
111 "id" : "2"
112 }
113 ],
114 "matrix_element_type" : "float",
115 "format_url" : "http://biom-format.org/documentation/format_versions/biom-1.0.html",
116 "format" : "Biological Observation Matrix 1.0",
117 "columns" : [
118 {
119 "metadata" : null,
120 "id" : "Sample1"
121 },
122 {
123 "metadata" : null,
124 "id" : "Sample2"
125 },
126 {
127 "metadata" : null,
128 "id" : "Sample3"
129 }
130 ],
131 "shape" : [
132 5,
133 3
134 ],
135 "id" : "",
136 "type" : "OTU table"
137 }